Resource

Id ATAC-seq/ENCSR261PWPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR261PWP [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR261PWP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0004148/
  • biosample_summary: Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2021-09-23T04:51:29.083803+00:00
  • date_released: 2021-10-13
  • doi: 10.17989/ENCSR261PWP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR261PWP float

ATAC-seq_ENCSR261PWP
ATAC-seq ENCSR261PWP [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR261PWP [1.34, 42.8]
n
42,859,834
mean
9.67
sd
5.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428598341.33% 87874
chr1 4264382 1.71% 8645
chr2 3425574 1.41% 7238
chr3 2746869 1.39% 5769
chr4 1632461 0.86% 3409
chr5 2046007 1.13% 4274
chr6 2658922 1.56% 5529
chr7 2087473 1.31% 4299
chr8 1772250 1.22% 3697
chr9 1664742 1.20% 3383
chr10 2047276 1.53% 4267
chr11 2075637 1.54% 4269
chr12 2179973 1.64% 4439
chr13 1010665 0.88% 2170
chr14 1491327 1.39% 3069
chr15 1429178 1.40% 3005
chr16 1553841 1.72% 3062
chr17 2163638 2.60% 4226
chr18 767406 0.95% 1670
chr19 1867713 3.19% 3451
chr20 1108155 1.72% 2266
chr21 586829 1.26% 1178
chr22 957214 1.88% 1879
chrX 1246183 0.80% 2505
chrY 76119 0.13% 175
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87874 150 2428 487.74 402
global segment-length histogram

Files

Filename Size md5
ENCFF456OPK.bed.gz 3.07 MB da5ca4de6ea9d542a799752b670ad8df
ENCFF456OPK.tabix.bed.gz 973.28 KB f4aa0b41539b201bae308661612fa972
ENCFF456OPK.tabix.bed.gz.tbi 360.89 KB 93cf1d757c81ded87dceef114f95e3dc
genomic_resource.yaml 2.05 KB 07a297d1d05213957f9b0d91f98bffef
statistics/