Resource
| Id | ATAC-seq/ENCSR260LAN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR260LAN [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"]
|
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (48 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN411JRT|/analyses/ENCAN411JRT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF991OGT|/files/ENCFF991OGT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.656739. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF991OGT|/files/ENCFF991OGT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.65. audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF184REK|/files/ENCFF184REK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.667366. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF184REK|/files/ENCFF184REK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.67. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed file {ENCFF991OGT|/files/ENCFF991OGT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC2 value of 2.73. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed file {ENCFF184REK|/files/ENCFF184REK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC2 value of 2.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR260LAN | float |
ATAC-seq_ENCSR260LAN |
ATAC-seq ENCSR260LAN [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years)"]
|
 |
[1.32, 44.8] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF705AZV.bed.gz | 3.04 MB | 0267d9f7b11921c566553a9c71caee82 |
| ENCFF705AZV.bed.gz.dvc | 101.0 B | ad1ff75f64c0be8006b774c7141f5317 |
| ENCFF705AZV.tabix.bed.gz | 791.75 KB | cde8c575a34f0b840d32314242f17c70 |
| ENCFF705AZV.tabix.bed.gz.dvc | 106.0 B | 8d8da92b745039aafb22f0a6c48495b0 |
| ENCFF705AZV.tabix.bed.gz.tbi | 307.12 KB | ca7dca05916fc21d10b96c330c484d0c |
| ENCFF705AZV.tabix.bed.gz.tbi.dvc | 110.0 B | 6d59b92c2474d95fc0aa376f6c03dfb7 |
| genomic_resource.yaml | 5.28 KB | 33d67c01172e6e812bbefcc6ce9412fc |
| statistics/ |