Resource

Id ATAC-seq/ENCSR258RSHcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR258RSH [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR258RSH
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (38 years)
  • date_created: 2021-01-22T21:04:52.865517+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR258RSH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR258RSH float

ATAC-seq_ENCSR258RSH
ATAC-seq ENCSR258RSH [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR258RSH [1.49, 41.8]
n
36,816,865
mean
9.46
sd
5.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 368168651.14% 62536
chr1 3743290 1.50% 6247
chr2 2778807 1.15% 4837
chr3 2085622 1.05% 3670
chr4 1326855 0.70% 2247
chr5 1671606 0.92% 2915
chr6 2155646 1.26% 3683
chr7 1803799 1.13% 3084
chr8 1398397 0.96% 2453
chr9 1444919 1.04% 2422
chr10 1708153 1.28% 2996
chr11 1856374 1.37% 3101
chr12 1827312 1.37% 3056
chr13 823316 0.72% 1404
chr14 1320449 1.23% 2263
chr15 1248413 1.22% 2178
chr16 1421421 1.57% 2315
chr17 2110144 2.53% 3493
chr18 611158 0.76% 1097
chr19 1923521 3.28% 3063
chr20 1012942 1.57% 1739
chr21 509160 1.09% 844
chr22 909579 1.79% 1535
chrX 1060542 0.68% 1774
chrY 65440 0.11% 120
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62536 150 3431 588.73 475.5
global segment-length histogram

Files

Filename Size md5
ENCFF788BUI.bed.gz 2.66 MB 1af009b5a4bae42a061f66f8de0bda37
ENCFF788BUI.tabix.bed.gz 712.87 KB c37e0659b2b4557018fe72317538be3a
ENCFF788BUI.tabix.bed.gz.tbi 294.96 KB 06ea7d64e7ea66e7d6d9ed995126c432
genomic_resource.yaml 1.89 KB 6142903c41e7fa92c98b4497199f39a7
statistics/