Resource

Id ATAC-seq/ENCSR258JCLcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR258JCL [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR258JCL
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (37 years)
  • date_created: 2016-11-01T02:13:17.905361+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR258JCL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR258JCL float

ATAC-seq_ENCSR258JCL
ATAC-seq ENCSR258JCL [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR258JCL [1.31, 32.8]
n
51,215,480
mean
6.05
sd
2.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 512154801.59% 98377
chr1 5056398 2.03% 9597
chr2 4162688 1.72% 8190
chr3 3371583 1.70% 6633
chr4 2023176 1.06% 4040
chr5 2608636 1.44% 5179
chr6 3068627 1.80% 6046
chr7 2532136 1.59% 4966
chr8 2163189 1.49% 4248
chr9 2250421 1.63% 4313
chr10 2616893 1.96% 5153
chr11 2613665 1.93% 4901
chr12 2400286 1.80% 4601
chr13 1169349 1.02% 2298
chr14 1612580 1.51% 3064
chr15 1871853 1.84% 3614
chr16 1885529 2.09% 3445
chr17 2591780 3.11% 4661
chr18 1014272 1.26% 2102
chr19 1813274 3.09% 2987
chr20 1371119 2.13% 2663
chr21 622351 1.33% 1212
chr22 1168607 2.30% 2119
chrX 1134152 0.73% 2141
chrY 92916 0.16% 204
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98377 150 3334 520.6 406
global segment-length histogram

Files

Filename Size md5
ENCFF080IAR.bed.gz 3.94 MB 86e2580cf9eb4ef45b2d31a788a7dab1
ENCFF080IAR.tabix.bed.gz 1.08 MB 7ffca507bcb27390458e3fbd40f5fc94
ENCFF080IAR.tabix.bed.gz.tbi 382.51 KB a37c4b801f19ca1312f79d30515966a7
genomic_resource.yaml 1.65 KB a5112c7bbab8384b543c372b41099bd9
statistics/