Resource
| Id | ATAC-seq/ENCSR253QLW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR253QLW [biosample_summary="Homo sapiens GM18511"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN245ZSA|/analyses/ENCAN245ZSA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF686SWP|/files/ENCFF686SWP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.786913. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF686SWP|/files/ENCFF686SWP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR253QLW | float |
ATAC-seq_ENCSR253QLW |
ATAC-seq ENCSR253QLW [biosample_summary="Homo sapiens GM18511"]
|
 |
[1.41, 44.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 69875585 | 2.17% | 118072 |
| chr1 | 5981019 | 2.40% | 9972 |
| chr2 | 6289191 | 2.60% | 10822 |
| chr3 | 5094339 | 2.57% | 8850 |
| chr4 | 4523639 | 2.38% | 7906 |
| chr5 | 4470047 | 2.46% | 7636 |
| chr6 | 4802314 | 2.81% | 8209 |
| chr7 | 3990695 | 2.50% | 6746 |
| chr8 | 3679855 | 2.54% | 6340 |
| chr9 | 2731845 | 1.97% | 4636 |
| chr10 | 3428301 | 2.56% | 5828 |
| chr11 | 3294411 | 2.44% | 5467 |
| chr12 | 3341599 | 2.51% | 5608 |
| chr13 | 2068632 | 1.81% | 3592 |
| chr14 | 2095609 | 1.96% | 3495 |
| chr15 | 1762855 | 1.73% | 2957 |
| chr16 | 1766500 | 1.96% | 2806 |
| chr17 | 1987891 | 2.39% | 3164 |
| chr18 | 1696130 | 2.11% | 2939 |
| chr19 | 1537925 | 2.62% | 2222 |
| chr20 | 1433054 | 2.22% | 2405 |
| chr21 | 644945 | 1.38% | 1060 |
| chr22 | 707093 | 1.39% | 1097 |
| chrX | 2547356 | 1.63% | 4314 |
| chrY | 340 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118072 | 150 | 3024 | 591.8 | 499 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF313BZQ.bed.gz | 5.05 MB | 0882849f57738b32d8463d776dd86d1b |
| ENCFF313BZQ.tabix.bed.gz | 1.3 MB | dba738526e4b793b9d96021abe30feaa |
| ENCFF313BZQ.tabix.bed.gz.tbi | 479.1 KB | edea3c82560f452e0631a824f314f7c7 |
| genomic_resource.yaml | 2.49 KB | 2e09bc6716c32d46de5b82a519bf0e58 |
| statistics/ |