ATAC-seq_ENCSR253QLW
ATAC-seq ENCSR253QLW [biosample_summary="Homo sapiens GM18511"]
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| Id: | ATAC-seq/ENCSR253QLW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR253QLW [biosample_summary="Homo sapiens GM18511"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN245ZSA|/analyses/ENCAN245ZSA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF686SWP|/files/ENCFF686SWP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.786913. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF686SWP|/files/ENCFF686SWP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR253QLW | float |
ATAC-seq_ENCSR253QLW |
ATAC-seq ENCSR253QLW [biosample_summary="Homo sapiens GM18511"]
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[1.41, 44.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF313BZQ.bed.gz | 5.05 MB | 0882849f57738b32d8463d776dd86d1b |
| ENCFF313BZQ.bed.gz.dvc | 101.0 B | e11d5d2e54eef0b845b41f05ce8a82b3 |
| ENCFF313BZQ.tabix.bed.gz | 1.3 MB | dba738526e4b793b9d96021abe30feaa |
| ENCFF313BZQ.tabix.bed.gz.dvc | 107.0 B | 2bc5ceb36c958b555cc9d2852b585cb8 |
| ENCFF313BZQ.tabix.bed.gz.tbi | 479.1 KB | edea3c82560f452e0631a824f314f7c7 |
| ENCFF313BZQ.tabix.bed.gz.tbi.dvc | 110.0 B | e5cc83ea723399afe5e5432742129629 |
| genomic_resource.yaml | 2.49 KB | 2e09bc6716c32d46de5b82a519bf0e58 |
| genomic_resource_original.yaml | 2.42 KB | 4a483faf1e3de818d1311d7113e847c8 |
| statistics/ |