ATAC-seq_ENCSR251POP
ATAC-seq ENCSR251POP [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"]
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| Id: | ATAC-seq/ENCSR251POP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR251POP [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN366VVQ|/analyses/ENCAN366VVQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF446FCI|/files/ENCFF446FCI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.868172. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF446FCI|/files/ENCFF446FCI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR251POP | float |
ATAC-seq_ENCSR251POP |
ATAC-seq ENCSR251POP [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"]
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[1.22, 41.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF678PAI.bed.gz | 6.22 MB | 20bba6d388cefb7965b206c51b826354 |
| ENCFF678PAI.bed.gz.dvc | 101.0 B | 06d87bfe054b4183ef842244bbc6bebf |
| ENCFF678PAI.tabix.bed.gz | 1.73 MB | 58a2a6064641d7102ce0a1c0cf05a39a |
| ENCFF678PAI.tabix.bed.gz.dvc | 107.0 B | 361d465ef565a0e1d56b892a0062fe72 |
| ENCFF678PAI.tabix.bed.gz.tbi | 525.26 KB | 7f632aa14bc77c0583406d42fb961e09 |
| ENCFF678PAI.tabix.bed.gz.tbi.dvc | 110.0 B | 6b776cc3b66cb6d11ff8bf7a240a810f |
| genomic_resource.yaml | 2.56 KB | c6930b053d96c5446cfa83fbb4270aeb |
| genomic_resource_original.yaml | 2.47 KB | 8e0063c5bffe26b9c8a7ce1d11699b13 |
| statistics/ |