ATAC-seq_ENCSR249FXU
ATAC-seq ENCSR249FXU [biosample_summary="Homo sapiens HG03045"]
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| Id: | ATAC-seq/ENCSR249FXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR249FXU [biosample_summary="Homo sapiens HG03045"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN501VDJ|/analyses/ENCAN501VDJ/} has in progress subobject document {e3d4ed9b-0dd0-4237-96f6-1b396863f09a|/documents/e3d4ed9b-0dd0-4237-96f6-1b396863f09a/} audit_internal_action: Released analysis {ENCAN501VDJ|/analyses/ENCAN501VDJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF216MFD|/files/ENCFF216MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.786952. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF216MFD|/files/ENCFF216MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR249FXU | float |
ATAC-seq_ENCSR249FXU |
ATAC-seq ENCSR249FXU [biosample_summary="Homo sapiens HG03045"]
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[1.43, 29.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF935BZV.bed.gz | 3.19 MB | a93770cd716148a9deb1461eb877cfc3 |
| ENCFF935BZV.bed.gz.dvc | 101.0 B | 41ee3c0394427c029d07426232de41c1 |
| ENCFF935BZV.tabix.bed.gz | 907.12 KB | a0812bb2a4bf6b8d4778e4fc185d933a |
| ENCFF935BZV.tabix.bed.gz.dvc | 106.0 B | b65ea43ba1729bd1a1dcb4aa6045fe26 |
| ENCFF935BZV.tabix.bed.gz.tbi | 385.33 KB | 4433c36ca30c1ef64dbd649cface3a4e |
| ENCFF935BZV.tabix.bed.gz.tbi.dvc | 110.0 B | 0d56cdc0bd7a132531cf318c54b756d9 |
| genomic_resource.yaml | 2.71 KB | eb4c5e9461715673551e5a70d75d815e |
| genomic_resource_original.yaml | 2.64 KB | d6969c16dad0dea7e15fc6630374a086 |
| statistics/ |