Resource

Id ATAC-seq/ENCSR248ZACcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR248ZAC [biosample_summary="Homo sapiens T-helper 17 cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR248ZAC
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (42 years)
  • date_created: 2021-09-23T04:38:20.884189+00:00
  • date_released: 2021-11-16
  • doi: 10.17989/ENCSR248ZAC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment: This dataset cannot be repeated and will be released as is.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR248ZAC float

ATAC-seq_ENCSR248ZAC

ATAC-seq ENCSR248ZAC [biosample_summary="Homo sapiens T-helper 17 cell male adult (42 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR248ZAC [1.66, 32.9]
n
27,371,131
mean
7.53
sd
4.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 273711310.85% 59306
chr1 2620373 1.05% 5598
chr2 2149430 0.89% 4779
chr3 1636021 0.83% 3588
chr4 1074192 0.56% 2320
chr5 1351925 0.74% 2991
chr6 1603281 0.94% 3480
chr7 1393130 0.87% 3035
chr8 1135878 0.78% 2491
chr9 1089317 0.79% 2376
chr10 1336828 1.00% 2955
chr11 1376489 1.02% 3002
chr12 1359605 1.02% 2935
chr13 597695 0.52% 1309
chr14 925632 0.86% 1990
chr15 902779 0.89% 1980
chr16 1057926 1.17% 2235
chr17 1468170 1.76% 3131
chr18 507916 0.63% 1147
chr19 1397738 2.38% 2851
chr20 769406 1.19% 1748
chr21 380086 0.81% 800
chr22 638128 1.26% 1375
chrX 575697 0.37% 1138
chrY 23489 0.04% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59306 150 2403 461.52 386
global segment-length histogram

Files

Filename Size md5
ENCFF117WNZ.bed.gz 1.97 MB cdeec307bc4af4793d4855f038cd8190
ENCFF117WNZ.tabix.bed.gz 662.39 KB 91e1a24d8d67d10fe97c3a6f2d635dff
ENCFF117WNZ.tabix.bed.gz.tbi 312.69 KB d601f516d0dc6447413dc3dbdb68a1a6
genomic_resource.yaml 2.42 KB 0046ac1603f655265334d7f8604bbc2e
statistics/