ATAC-seq_ENCSR248ZAC
ATAC-seq ENCSR248ZAC [biosample_summary="Homo sapiens T-helper 17 cell male adult (42 years)"]
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| Id: | ATAC-seq/ENCSR248ZAC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR248ZAC [biosample_summary="Homo sapiens T-helper 17 cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN130LYZ|/analyses/ENCAN130LYZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF117WNZ|/files/ENCFF117WNZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has a FRiP score of 0.16. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF117WNZ|/files/ENCFF117WNZ/} (overlap peaks) and {ENCFF518VXK|/files/ENCFF518VXK/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 81464 and 41785 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR248ZAC | float |
ATAC-seq_ENCSR248ZAC |
ATAC-seq ENCSR248ZAC [biosample_summary="Homo sapiens T-helper 17 cell male adult (42 years)"]
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[1.66, 32.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF117WNZ.bed.gz | 1.97 MB | cdeec307bc4af4793d4855f038cd8190 |
| ENCFF117WNZ.bed.gz.dvc | 101.0 B | aed66005528eb73cd6e44aeaa20afe44 |
| ENCFF117WNZ.tabix.bed.gz | 662.39 KB | 91e1a24d8d67d10fe97c3a6f2d635dff |
| ENCFF117WNZ.tabix.bed.gz.dvc | 106.0 B | 659b50f3eb57a88309c7de76e4c5f019 |
| ENCFF117WNZ.tabix.bed.gz.tbi | 312.69 KB | d601f516d0dc6447413dc3dbdb68a1a6 |
| ENCFF117WNZ.tabix.bed.gz.tbi.dvc | 110.0 B | c100fed683f1c6562b2915cf5ce67102 |
| genomic_resource.yaml | 2.42 KB | 0046ac1603f655265334d7f8604bbc2e |
| genomic_resource_original.yaml | 2.33 KB | 09fc69e232f41ef84c5199e7ad2be3f6 |
| statistics/ |