ATAC-seq_ENCSR242QRV
ATAC-seq ENCSR242QRV [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"]
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| Id: | ATAC-seq/ENCSR242QRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR242QRV [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN747ETK|/analyses/ENCAN747ETK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF348XSG|/files/ENCFF348XSG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.09. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF225GIF|/files/ENCFF225GIF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.892108. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF225GIF|/files/ENCFF225GIF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR242QRV | float |
ATAC-seq_ENCSR242QRV |
ATAC-seq ENCSR242QRV [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"]
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[1.44, 24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF348XSG.bed.gz | 3.79 MB | dea167ef5a0d82518a459b7c69a1018d |
| ENCFF348XSG.bed.gz.dvc | 101.0 B | 43b305a62e28c9b53c120ab189f7430f |
| ENCFF348XSG.tabix.bed.gz | 1.17 MB | 8c232a105dfaa49b39d5431f5653407f |
| ENCFF348XSG.tabix.bed.gz.dvc | 107.0 B | fc03e2b6b51f272d9221b4d53b73f812 |
| ENCFF348XSG.tabix.bed.gz.tbi | 470.23 KB | 126a7a9f6d923843b7d23baa90270df1 |
| ENCFF348XSG.tabix.bed.gz.tbi.dvc | 110.0 B | c1de3636f61e5c44de0e47646be80f28 |
| genomic_resource.yaml | 3.38 KB | a95404631a48221dd22d8112e5681c97 |
| genomic_resource_original.yaml | 3.27 KB | a1bed118ae973a5f7962f3e9c7aa1000 |
| statistics/ |