ATAC-seq_ENCSR241VGH
ATAC-seq ENCSR241VGH [biosample_summary="Homo sapiens GM18502"]
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| Id: | ATAC-seq/ENCSR241VGH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR241VGH [biosample_summary="Homo sapiens GM18502"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN388WIC|/analyses/ENCAN388WIC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF854BZA|/files/ENCFF854BZA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.660281. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF854BZA|/files/ENCFF854BZA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR241VGH | float |
ATAC-seq_ENCSR241VGH |
ATAC-seq ENCSR241VGH [biosample_summary="Homo sapiens GM18502"]
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[1.37, 42.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF453GXR.bed.gz | 4.58 MB | eccb628743fade6e6216bb48e4989300 |
| ENCFF453GXR.bed.gz.dvc | 101.0 B | 06201ca5683dc5033115ab91f9eb59f7 |
| ENCFF453GXR.tabix.bed.gz | 1.24 MB | f4f8720a49ffef4c081c63cada449ccc |
| ENCFF453GXR.tabix.bed.gz.dvc | 107.0 B | 4cbcedc6b300aef96b69d31f6d8d59e9 |
| ENCFF453GXR.tabix.bed.gz.tbi | 469.39 KB | 970a72dfb9dfdeaa72e0ffcba297aa88 |
| ENCFF453GXR.tabix.bed.gz.tbi.dvc | 110.0 B | f37434f0e28e28a03f4d2242b264b4c1 |
| genomic_resource.yaml | 2.49 KB | 933a912559913590a5310f1a3566fa24 |
| genomic_resource_original.yaml | 2.42 KB | 1993d875328e91a1df873a2d34b6ee3c |
| statistics/ |