ATAC-seq_ENCSR241OBO
ATAC-seq ENCSR241OBO [biosample_summary="Homo sapiens adrenal gland tissue female adult (59 years)"]
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| Id: | ATAC-seq/ENCSR241OBO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR241OBO [biosample_summary="Homo sapiens adrenal gland tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN675IIL|/analyses/ENCAN675IIL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN675IIL|/analyses/ENCAN675IIL/} has in progress subobject document {e4a900c7-0c08-466f-8d51-110cd903d432|/documents/e4a900c7-0c08-466f-8d51-110cd903d432/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF757CCU|/files/ENCFF757CCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.857329. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF757CCU|/files/ENCFF757CCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR241OBO | float |
ATAC-seq_ENCSR241OBO |
ATAC-seq ENCSR241OBO [biosample_summary="Homo sapiens adrenal gland tissue female adult (59 years)"]
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[1.25, 42] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF541GYF.bed.gz | 7.0 MB | b725daa904a45e640645eae1c39b73bf |
| ENCFF541GYF.bed.gz.dvc | 101.0 B | 0e79af61d836fecca6399c6e350d8137 |
| ENCFF541GYF.tabix.bed.gz | 2.03 MB | 0afb35cc8d5919ba825ebb7ab238b856 |
| ENCFF541GYF.tabix.bed.gz.dvc | 107.0 B | 6d1f1ac24b18dea000f2074ac543f4ca |
| ENCFF541GYF.tabix.bed.gz.tbi | 539.79 KB | a4588a71bb1902acc8bfcc2281551563 |
| ENCFF541GYF.tabix.bed.gz.tbi.dvc | 110.0 B | 2e49c41fdc7965dff6130675c5f4e0d7 |
| genomic_resource.yaml | 2.79 KB | 7f73bf11fc9d83838de666753a34982a |
| genomic_resource_original.yaml | 2.69 KB | ef2513a54252eb5972951062a579a4ee |
| statistics/ |