Resource

Id ATAC-seq/ENCSR238VHVcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR238VHV [biosample_summary="Homo sapiens fallopian tube tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR238VHV
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003889/
  • biosample_summary: Homo sapiens fallopian tube tissue female adult (46 years)
  • date_created: 2019-05-29T10:54:11.302727+00:00
  • date_released: 2022-01-25
  • doi: 10.17989/ENCSR238VHV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR238VHV float

ATAC-seq_ENCSR238VHV
ATAC-seq ENCSR238VHV [biosample_summary="Homo sapiens fallopian tube tissue female adult (46 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR238VHV [1.3, 27.8]
n
80,696,124
mean
4.27
sd
2.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 806961242.51% 136511
chr1 7521774 3.02% 12439
chr2 6277647 2.59% 10891
chr3 5153201 2.60% 9040
chr4 3770793 1.98% 6779
chr5 4182439 2.30% 7366
chr6 4830411 2.83% 8368
chr7 4037913 2.53% 6978
chr8 3507707 2.42% 6184
chr9 3638253 2.63% 6107
chr10 3875761 2.90% 6616
chr11 4267534 3.16% 6996
chr12 3825972 2.87% 6458
chr13 2031973 1.78% 3634
chr14 2606641 2.44% 4383
chr15 2710664 2.66% 4575
chr16 2615573 2.90% 4117
chr17 3810061 4.58% 5992
chr18 1819173 2.26% 3218
chr19 2926455 4.99% 4213
chr20 2249834 3.49% 3802
chr21 1147451 2.46% 1917
chr22 1722211 3.39% 2708
chrX 2164541 1.39% 3721
chrY 2142 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136511 150 3927 591.13 461
global segment-length histogram

Files

Filename Size md5
ENCFF677EWJ.bed.gz 5.46 MB 1d6693783aac3b784c40463589921a9f
ENCFF677EWJ.tabix.bed.gz 1.5 MB 07d48ffedaa0a8fa7ba6f42f71cd81f6
ENCFF677EWJ.tabix.bed.gz.tbi 481.4 KB 8065872daacea611623b084fb86177f1
genomic_resource.yaml 1.43 KB a2ccb9698621ada581a97600787b1483
statistics/