Resource

Id ATAC-seq/ENCSR237VSFcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR237VSF [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
Description
Labels
  • accession: ENCSR237VSF
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with lipopolysaccharide
  • date_created: 2017-01-18T01:47:47.430887+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR237VSF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with lipopolysaccharide
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR237VSF float

ATAC-seq_ENCSR237VSF
ATAC-seq ENCSR237VSF [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
 HISTOGRAM FOR ATAC-seq_ENCSR237VSF [1.63, 30.6]
n
43,182,702
mean
7.3
sd
3.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 431827021.34% 100507
chr1 3853641 1.55% 8855
chr2 3588330 1.48% 8574
chr3 2880450 1.45% 6807
chr4 2159884 1.14% 5167
chr5 2350837 1.29% 5667
chr6 2624497 1.54% 6144
chr7 2349369 1.47% 5511
chr8 2095756 1.44% 4997
chr9 1777249 1.28% 4134
chr10 2096243 1.57% 4958
chr11 2164424 1.60% 5044
chr12 2096101 1.57% 4901
chr13 1095275 0.96% 2594
chr14 1372024 1.28% 3197
chr15 1282322 1.26% 3000
chr16 1435273 1.59% 3153
chr17 1733650 2.08% 3812
chr18 1011417 1.26% 2434
chr19 1537408 2.62% 3056
chr20 1134421 1.76% 2665
chr21 547071 1.17% 1245
chr22 700451 1.38% 1543
chrX 1295447 0.83% 3044
chrY 1162 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100507 150 2577 429.65 353
global segment-length histogram

Files

Filename Size md5
ENCFF491PHT.bed.gz 3.27 MB c89a683910723f3d2f11ccf53883818f
ENCFF491PHT.tabix.bed.gz 1.09 MB 9c8f6de1bb3f0875a275e981a93d2d40
ENCFF491PHT.tabix.bed.gz.tbi 439.22 KB 1fa561cc823b0db6939ac56804e5f647
genomic_resource.yaml 1.46 KB de0e3a177b47b2cba21119fb33f4e8af
statistics/