ATAC-seq_ENCSR233HSC
ATAC-seq ENCSR233HSC [biosample_summary="Homo sapiens GM21723"]
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| Id: | ATAC-seq/ENCSR233HSC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR233HSC [biosample_summary="Homo sapiens GM21723"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN885BLD|/analyses/ENCAN885BLD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF443RUI|/files/ENCFF443RUI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.892985. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF443RUI|/files/ENCFF443RUI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR233HSC | float |
ATAC-seq_ENCSR233HSC |
ATAC-seq ENCSR233HSC [biosample_summary="Homo sapiens GM21723"]
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[1.4, 36.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693CDG.bed.gz | 4.17 MB | 40787ba1d5b871b9b4a842cbd4d67d49 |
| ENCFF693CDG.bed.gz.dvc | 101.0 B | 96095efef323c63ad10c0e5d2edf2020 |
| ENCFF693CDG.tabix.bed.gz | 1.11 MB | 341a0fd67f2f0d478d2d3b3df9cb893e |
| ENCFF693CDG.tabix.bed.gz.dvc | 107.0 B | 4b7916566865bce6a8257fe263fdefed |
| ENCFF693CDG.tabix.bed.gz.tbi | 442.26 KB | 612d0c0590f79201b72b75a27071e61c |
| ENCFF693CDG.tabix.bed.gz.tbi.dvc | 110.0 B | bfd253484f21c4257c30ddf48b1dfe6b |
| genomic_resource.yaml | 2.49 KB | f21606253e79d8f136f209a6671701fb |
| genomic_resource_original.yaml | 2.42 KB | 78deb3a734268c307375cbca0a346a98 |
| statistics/ |