ATAC-seq_ENCSR231BZU
ATAC-seq ENCSR231BZU [biosample_summary="Homo sapiens GM19351"]
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| Id: | ATAC-seq/ENCSR231BZU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR231BZU [biosample_summary="Homo sapiens GM19351"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN805VMY|/analyses/ENCAN805VMY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF342KIA|/files/ENCFF342KIA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.824486. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF342KIA|/files/ENCFF342KIA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR231BZU | float |
ATAC-seq_ENCSR231BZU |
ATAC-seq ENCSR231BZU [biosample_summary="Homo sapiens GM19351"]
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[1.41, 45.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF568ADF.bed.gz | 4.83 MB | 265cbc4feca24de1781ffa1813f3269c |
| ENCFF568ADF.bed.gz.dvc | 101.0 B | 9d668c4ef2dd7e6f2e5db950537f3a28 |
| ENCFF568ADF.tabix.bed.gz | 1.39 MB | 533bfd12bab00e6050d2abd89f03bf15 |
| ENCFF568ADF.tabix.bed.gz.dvc | 107.0 B | f8f91c9102a0f5b1f337fddc52fad7c5 |
| ENCFF568ADF.tabix.bed.gz.tbi | 504.68 KB | f061b9ae4c4e5ef5bcf6fa43fdc6c942 |
| ENCFF568ADF.tabix.bed.gz.tbi.dvc | 110.0 B | bd8000d38dcd30adc5dc4db30989b82b |
| genomic_resource.yaml | 2.49 KB | ae92fef0799d6c5c8a3a1ac6f31ead62 |
| genomic_resource_original.yaml | 2.42 KB | b778ed04dfc337db9c0c8c21de1b17a8 |
| statistics/ |