ATAC-seq_ENCSR227FVE
ATAC-seq ENCSR227FVE [biosample_summary="Homo sapiens ovary tissue female adult (59 years)"]
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| Id: | ATAC-seq/ENCSR227FVE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR227FVE [biosample_summary="Homo sapiens ovary tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN981KIO|/analyses/ENCAN981KIO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN981KIO|/analyses/ENCAN981KIO/} has in progress subobject document {916f3765-8ecb-4cc9-9d3d-26c6ff4427cb|/documents/916f3765-8ecb-4cc9-9d3d-26c6ff4427cb/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF615QSS|/files/ENCFF615QSS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.866052. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF615QSS|/files/ENCFF615QSS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR227FVE | float |
ATAC-seq_ENCSR227FVE |
ATAC-seq ENCSR227FVE [biosample_summary="Homo sapiens ovary tissue female adult (59 years)"]
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[1.23, 30.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF497SGQ.bed.gz | 6.12 MB | 2252ecbd4ca19d522caa12690cc605f7 |
| ENCFF497SGQ.bed.gz.dvc | 101.0 B | 37463da7c73fc1360a35ba2afec415f7 |
| ENCFF497SGQ.tabix.bed.gz | 1.42 MB | b17859400b642e867160da5ec06db499 |
| ENCFF497SGQ.tabix.bed.gz.dvc | 107.0 B | fcab02578015186c1929aa3e573ee0a8 |
| ENCFF497SGQ.tabix.bed.gz.tbi | 417.24 KB | d97913ae8fb4c50fbd1d5642da0a5c88 |
| ENCFF497SGQ.tabix.bed.gz.tbi.dvc | 110.0 B | 8365c6c096cff43d5765d79706343ded |
| genomic_resource.yaml | 2.77 KB | 8e7ee0a5a6b35eb98c6657dab783c67b |
| genomic_resource_original.yaml | 2.67 KB | 08191bf5a773db1dfbda3f16a27519bd |
| statistics/ |