Resource

Id ATAC-seq/ENCSR220ASCcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR220ASC [biosample_summary="Homo sapiens A549"]
Description
Labels
  • accession: ENCSR220ASC
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2018-03-28T16:09:18.477154+00:00
  • date_released: 2018-04-23
  • doi: 10.17989/ENCSR220ASC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR220ASC float

ATAC-seq_ENCSR220ASC

ATAC-seq ENCSR220ASC [biosample_summary="Homo sapiens A549"]
HISTOGRAM FOR ATAC-seq_ENCSR220ASC [1.36, 36.6]
n
62,030,094
mean
5.16
sd
2.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 620300941.93% 110923
chr1 5558719 2.23% 9688
chr2 5280908 2.18% 9862
chr3 3370710 1.70% 6155
chr4 2041468 1.07% 3703
chr5 3271986 1.80% 6060
chr6 2837010 1.66% 4936
chr7 3500259 2.20% 6478
chr8 2830744 1.95% 5231
chr9 2816334 2.04% 5086
chr10 3038056 2.27% 5464
chr11 3051586 2.26% 5245
chr12 3203696 2.40% 5709
chr13 981635 0.86% 1768
chr14 1961929 1.83% 3506
chr15 2468247 2.42% 4515
chr16 2448044 2.71% 4261
chr17 3941675 4.73% 6768
chr18 888004 1.10% 1649
chr19 3101758 5.29% 5161
chr20 1920536 2.98% 3580
chr21 570144 1.22% 989
chr22 1225117 2.41% 2145
chrX 1647449 1.06% 2816
chrY 74080 0.13% 148
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110923 150 3647 559.22 425
global segment-length histogram

Files

Filename Size md5
ENCFF735UWS.bed.gz 4.77 MB d808e8bac1f26d964878129f4f4f1705
ENCFF735UWS.tabix.bed.gz 1.21 MB 8dea978863d463893c2447234007bd71
ENCFF735UWS.tabix.bed.gz.tbi 443.41 KB 4054e6d6610aaae31e1a5a67df3e2815
genomic_resource.yaml 1.5 KB 73624ca9af88714d4c18036feee106fb
statistics/