ATAC-seq_ENCSR213DBU
ATAC-seq ENCSR213DBU [biosample_summary="Homo sapiens posterior vena cava tissue male adult (26 years)"]
×
| Id: | ATAC-seq/ENCSR213DBU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR213DBU [biosample_summary="Homo sapiens posterior vena cava tissue male adult (26 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN183MXX|/analyses/ENCAN183MXX/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF986AVU|/files/ENCFF986AVU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF666BNA|/files/ENCFF666BNA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.865432. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF666BNA|/files/ENCFF666BNA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR213DBU | float |
ATAC-seq_ENCSR213DBU |
ATAC-seq ENCSR213DBU [biosample_summary="Homo sapiens posterior vena cava tissue male adult (26 years)"]
|
|
[1.33, 29.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986AVU.bed.gz | 4.71 MB | 01ba9f8b729ebe6830c340357c7ab3e2 |
| ENCFF986AVU.bed.gz.dvc | 101.0 B | df027d3c5e5a2aacc1188db2ffb0353b |
| ENCFF986AVU.tabix.bed.gz | 1.46 MB | c238408a3eac9a29ee23bdd2dbdabdb6 |
| ENCFF986AVU.tabix.bed.gz.dvc | 107.0 B | a7e456dcf6c1463d8f37e816d3dec8ff |
| ENCFF986AVU.tabix.bed.gz.tbi | 471.29 KB | 3e279c1e2a116f63cf181974b99f4116 |
| ENCFF986AVU.tabix.bed.gz.tbi.dvc | 110.0 B | dc6b54ff5f6d3423df148f627571717c |
| genomic_resource.yaml | 3.35 KB | 5d5e5613e12ee53426d93152d3a76390 |
| genomic_resource_original.yaml | 3.25 KB | 4dea61757835b6c83b4d863c35079144 |
| statistics/ |