Resource

Id ATAC-seq/ENCSR208NBFcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR208NBF [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
Description
Labels
  • accession: ENCSR208NBF
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours
  • date_created: 2017-01-18T01:17:13.704297+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR208NBF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 2 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR208NBF float

ATAC-seq_ENCSR208NBF
ATAC-seq ENCSR208NBF [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR208NBF [1.37, 36.3]
n
63,390,849
mean
7.47
sd
4.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 633908491.97% 155839
chr1 5569899 2.24% 13642
chr2 5382714 2.22% 13402
chr3 4286708 2.16% 10637
chr4 3367231 1.77% 8414
chr5 3608469 1.99% 9022
chr6 3950281 2.31% 9704
chr7 3534618 2.22% 8638
chr8 3206192 2.21% 7979
chr9 2654137 1.92% 6609
chr10 3103280 2.32% 7763
chr11 3046910 2.26% 7464
chr12 3119364 2.34% 7743
chr13 1648720 1.44% 4108
chr14 1972834 1.84% 4811
chr15 1882935 1.85% 4715
chr16 1899900 2.10% 4515
chr17 2375515 2.85% 5617
chr18 1521637 1.89% 3813
chr19 1923518 3.28% 4179
chr20 1609432 2.50% 3963
chr21 802733 1.72% 1929
chr22 927443 1.83% 2204
chrX 1993169 1.28% 4956
chrY 3210 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 155839 150 3909 406.77 343
global segment-length histogram

Files

Filename Size md5
ENCFF492DSN.bed.gz 4.74 MB c4978aec818f7a545a8a50f255b95ef1
ENCFF492DSN.tabix.bed.gz 1.65 MB 9fd98d01f13eeca79d2dbfaba64acfbd
ENCFF492DSN.tabix.bed.gz.tbi 560.22 KB beb1ee5dc91eb0b327bf5d21ac51482b
genomic_resource.yaml 1.58 KB 19ebbaa1fc9e575aba78dffa4d94ea48
statistics/