Resource
| Id | ATAC-seq/ENCSR208HAP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR208HAP [biosample_summary="Homo sapiens HG02981"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN739PSF|/analyses/ENCAN739PSF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF710GAW|/files/ENCFF710GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.884594. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF710GAW|/files/ENCFF710GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR208HAP | float |
ATAC-seq_ENCSR208HAP |
ATAC-seq ENCSR208HAP [biosample_summary="Homo sapiens HG02981"]
|
 |
[1.55, 31.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55815134 | 1.73% | 107836 |
| chr1 | 5137738 | 2.06% | 9826 |
| chr2 | 4929768 | 2.04% | 9825 |
| chr3 | 3986857 | 2.01% | 7937 |
| chr4 | 3356491 | 1.76% | 6751 |
| chr5 | 3449565 | 1.90% | 6823 |
| chr6 | 3784760 | 2.22% | 7383 |
| chr7 | 3156465 | 1.98% | 6189 |
| chr8 | 2791208 | 1.92% | 5550 |
| chr9 | 2246423 | 1.62% | 4324 |
| chr10 | 2704893 | 2.02% | 5258 |
| chr11 | 2655384 | 1.97% | 5064 |
| chr12 | 2723453 | 2.04% | 5190 |
| chr13 | 1584014 | 1.39% | 3148 |
| chr14 | 1689601 | 1.58% | 3192 |
| chr15 | 1531539 | 1.50% | 2901 |
| chr16 | 1515298 | 1.68% | 2696 |
| chr17 | 1796703 | 2.16% | 3226 |
| chr18 | 1281074 | 1.59% | 2590 |
| chr19 | 1396909 | 2.38% | 2241 |
| chr20 | 1156892 | 1.80% | 2228 |
| chr21 | 496017 | 1.06% | 920 |
| chr22 | 663106 | 1.30% | 1143 |
| chrX | 1664706 | 1.07% | 3180 |
| chrY | 116270 | 0.20% | 251 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107836 | 150 | 2833 | 517.59 | 430 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF663YRQ.bed.gz | 4.01 MB | f1a68f9779ebde35b7d50ec0d744addf |
| ENCFF663YRQ.tabix.bed.gz | 1.18 MB | 5381223f82dd60ed2160b9a993a2f780 |
| ENCFF663YRQ.tabix.bed.gz.tbi | 471.78 KB | 13ca50a0f266f20a8e832bbd511a43ab |
| genomic_resource.yaml | 2.49 KB | 737ebb5bbbcb8c331da9cecb78636816 |
| statistics/ |