ATAC-seq_ENCSR208HAP
ATAC-seq ENCSR208HAP [biosample_summary="Homo sapiens HG02981"]
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| Id: | ATAC-seq/ENCSR208HAP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR208HAP [biosample_summary="Homo sapiens HG02981"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN739PSF|/analyses/ENCAN739PSF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF710GAW|/files/ENCFF710GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.884594. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF710GAW|/files/ENCFF710GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR208HAP | float |
ATAC-seq_ENCSR208HAP |
ATAC-seq ENCSR208HAP [biosample_summary="Homo sapiens HG02981"]
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[1.55, 31.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF663YRQ.bed.gz | 4.01 MB | f1a68f9779ebde35b7d50ec0d744addf |
| ENCFF663YRQ.bed.gz.dvc | 101.0 B | 776ad9e984d6d86d517cf338eab48a73 |
| ENCFF663YRQ.tabix.bed.gz | 1.18 MB | 5381223f82dd60ed2160b9a993a2f780 |
| ENCFF663YRQ.tabix.bed.gz.dvc | 107.0 B | 17b34eddd6007873772c74b4241ed0ff |
| ENCFF663YRQ.tabix.bed.gz.tbi | 471.78 KB | 13ca50a0f266f20a8e832bbd511a43ab |
| ENCFF663YRQ.tabix.bed.gz.tbi.dvc | 110.0 B | 142952c78e8837adbd7c8883d76736af |
| genomic_resource.yaml | 2.49 KB | 737ebb5bbbcb8c331da9cecb78636816 |
| genomic_resource_original.yaml | 2.42 KB | f0ab972b36fea21c887e19f79856385e |
| statistics/ |