ATAC-seq_ENCSR204SMO
ATAC-seq ENCSR204SMO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"]
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| Id: | ATAC-seq/ENCSR204SMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR204SMO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN684KTO|/analyses/ENCAN684KTO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN684KTO|/analyses/ENCAN684KTO/} has in progress subobject document {6acd2938-bc75-4608-9fea-e0c2dcad0a86|/documents/6acd2938-bc75-4608-9fea-e0c2dcad0a86/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836NAJ|/files/ENCFF836NAJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.862324. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836NAJ|/files/ENCFF836NAJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR204SMO | float |
ATAC-seq_ENCSR204SMO |
ATAC-seq ENCSR204SMO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"]
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[1.41, 37.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF344CDB.bed.gz | 3.96 MB | 0d1c84081209e2d8b6de15b9bf2b9edf |
| ENCFF344CDB.bed.gz.dvc | 101.0 B | 7ef8c25d633387aff75420d35bf103aa |
| ENCFF344CDB.tabix.bed.gz | 1.22 MB | 8c68bbff4b925014926eb4ae26a63049 |
| ENCFF344CDB.tabix.bed.gz.dvc | 107.0 B | d596b6a6fe5d354230fd7dfb2a91ddce |
| ENCFF344CDB.tabix.bed.gz.tbi | 449.75 KB | 1ad8caf91e46179464724a21be7ab812 |
| ENCFF344CDB.tabix.bed.gz.tbi.dvc | 110.0 B | 3b6be55966329cf91f34b77a697d5953 |
| genomic_resource.yaml | 2.8 KB | 10a09218370618b79d0e749db17ab7b3 |
| genomic_resource_original.yaml | 2.7 KB | 6f72251882c50a07aecf4b99b55f1226 |
| statistics/ |