Resource

Id ATAC-seq/ENCSR204PZTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR204PZT [biosample_summary="Homo sapiens heart left ventricle tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR204PZT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female adult (41 years)
  • date_created: 2019-07-30T08:11:57.148345+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR204PZT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR204PZT float

ATAC-seq_ENCSR204PZT
ATAC-seq ENCSR204PZT [biosample_summary="Homo sapiens heart left ventricle tissue female adult (41 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR204PZT [1.35, 23.8]
n
77,831,245
mean
3.65
sd
1.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 778312452.42% 126324
chr1 7513568 3.02% 11973
chr2 6171464 2.55% 10410
chr3 5004119 2.52% 8365
chr4 3216072 1.69% 5602
chr5 4159789 2.29% 7026
chr6 4377017 2.56% 7358
chr7 3929120 2.47% 6581
chr8 3375904 2.33% 5686
chr9 3364240 2.43% 5341
chr10 3978924 2.97% 6577
chr11 4016670 2.97% 6269
chr12 3725851 2.80% 6084
chr13 1887470 1.65% 3229
chr14 2409266 2.25% 3851
chr15 2787053 2.73% 4524
chr16 2777524 3.07% 4276
chr17 3727739 4.48% 5524
chr18 1659168 2.06% 2904
chr19 3073186 5.24% 4257
chr20 2131712 3.31% 3409
chr21 1061042 2.27% 1731
chr22 1841591 3.62% 2810
chrX 1642346 1.05% 2535
chrY 410 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126324 150 4318 616.12 492
global segment-length histogram

Files

Filename Size md5
ENCFF966JZT.bed.gz 5.23 MB d13768e871f090ed5a3a36f01aa2c823
ENCFF966JZT.tabix.bed.gz 1.39 MB 0196e45850da321d0e6c82b73eb4a78b
ENCFF966JZT.tabix.bed.gz.tbi 432.68 KB 0f367f3d9309b4d520171b411f145245
genomic_resource.yaml 2.21 KB a040c57e5779cb822ef91871bc17eb2a
statistics/