ATAC-seq_ENCSR201FIW
ATAC-seq ENCSR201FIW [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR201FIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR201FIW [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN189DMM|/analyses/ENCAN189DMM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN189DMM|/analyses/ENCAN189DMM/} has in progress subobject document {c45b5f87-73ed-4360-9b51-f2aa82fc51ae|/documents/c45b5f87-73ed-4360-9b51-f2aa82fc51ae/} audit_warning: Alignment file {ENCFF983POL|/files/ENCFF983POL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 22406224 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF983POL|/files/ENCFF983POL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.816357. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF983POL|/files/ENCFF983POL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR201FIW | float |
ATAC-seq_ENCSR201FIW |
ATAC-seq ENCSR201FIW [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
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[1.39, 34.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF911HZG.bed.gz | 3.28 MB | afb9c47d9597a6c14d02d1ab865ee1e3 |
| ENCFF911HZG.bed.gz.dvc | 101.0 B | f44fb4fe6d3708d8d0c1e880f8441017 |
| ENCFF911HZG.tabix.bed.gz | 1015.27 KB | f40096abc340fe502dfd963c008d4658 |
| ENCFF911HZG.tabix.bed.gz.dvc | 107.0 B | 614b696f9ef837591094d39169b7044a |
| ENCFF911HZG.tabix.bed.gz.tbi | 437.84 KB | eb2321b5ea44edebc2481f723b04a647 |
| ENCFF911HZG.tabix.bed.gz.tbi.dvc | 110.0 B | 2932361d2554acd8533294cd7ed889ba |
| genomic_resource.yaml | 3.16 KB | 842c50a87601d8bbdb7d7ec305b50349 |
| genomic_resource_original.yaml | 3.05 KB | 9cae5e6f4b418632dc3d4db0e0eb3bfd |
| statistics/ |