ATAC-seq_ENCSR189VFC
ATAC-seq ENCSR189VFC [biosample_summary="Homo sapiens HG02588"]
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| Id: | ATAC-seq/ENCSR189VFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR189VFC [biosample_summary="Homo sapiens HG02588"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN091SKJ|/analyses/ENCAN091SKJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF025ITU|/files/ENCFF025ITU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.745423. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF025ITU|/files/ENCFF025ITU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR189VFC | float |
ATAC-seq_ENCSR189VFC |
ATAC-seq ENCSR189VFC [biosample_summary="Homo sapiens HG02588"]
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[1.53, 43.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF561VYC.bed.gz | 3.56 MB | 787d4d4a5e71ec69eaec349d12715869 |
| ENCFF561VYC.bed.gz.dvc | 101.0 B | ca0d9c08784b7da5fd7ae14f61cef050 |
| ENCFF561VYC.tabix.bed.gz | 1.02 MB | d96c81d0df437cdc7d3c3aa817b41a91 |
| ENCFF561VYC.tabix.bed.gz.dvc | 107.0 B | 2ffdc80e45560a7167e5737c4ff21ac8 |
| ENCFF561VYC.tabix.bed.gz.tbi | 427.03 KB | 80f294b78167aaa38458c0dcb0fcbac0 |
| ENCFF561VYC.tabix.bed.gz.tbi.dvc | 110.0 B | 6d3b6f5378ba4329bbcb9ef264a1d775 |
| genomic_resource.yaml | 2.49 KB | 7e6f3dd8c96b449fd279ca65e0dc8bc3 |
| genomic_resource_original.yaml | 2.42 KB | caa36c491588fc76ef503193a6c797c5 |
| statistics/ |