ATAC-seq_ENCSR182VGJ
ATAC-seq ENCSR182VGJ [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"]
×
| Id: | ATAC-seq/ENCSR182VGJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR182VGJ [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN343IES|/analyses/ENCAN343IES/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF214HLR|/files/ENCFF214HLR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.13. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF358QFM|/files/ENCFF358QFM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.890348. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF358QFM|/files/ENCFF358QFM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR182VGJ | float |
ATAC-seq_ENCSR182VGJ |
ATAC-seq ENCSR182VGJ [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"]
|
|
[1.37, 23.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF214HLR.bed.gz | 5.05 MB | f9045c7401ba057f86709b67c0b3e9c3 |
| ENCFF214HLR.bed.gz.dvc | 101.0 B | 9192636e24de2f421e95650bc8dad719 |
| ENCFF214HLR.tabix.bed.gz | 1.49 MB | e4344accdd32e48d232863c96253edcd |
| ENCFF214HLR.tabix.bed.gz.dvc | 107.0 B | 22c6beb3dde31f488cabd6a572ea0f53 |
| ENCFF214HLR.tabix.bed.gz.tbi | 560.1 KB | 9141cac60e0a9e616c60b152819dc75e |
| ENCFF214HLR.tabix.bed.gz.tbi.dvc | 110.0 B | 312e2c503c5d8ed217b8fe9533cb92c0 |
| genomic_resource.yaml | 3.32 KB | 1f5483060b257034b25ec523ad24fc37 |
| genomic_resource_original.yaml | 3.23 KB | 6fe73a558639e7098c23ca822046674d |
| statistics/ |