ATAC-seq_ENCSR180HEL
ATAC-seq ENCSR180HEL [biosample_summary="Homo sapiens HG02678"]
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| Id: | ATAC-seq/ENCSR180HEL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR180HEL [biosample_summary="Homo sapiens HG02678"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN984CYS|/analyses/ENCAN984CYS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF447ZRG|/files/ENCFF447ZRG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.793776. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF447ZRG|/files/ENCFF447ZRG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR180HEL | float |
ATAC-seq_ENCSR180HEL |
ATAC-seq ENCSR180HEL [biosample_summary="Homo sapiens HG02678"]
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[1.39, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF872XXD.bed.gz | 3.99 MB | 16dc0c7706490bef9042cede2ccc3361 |
| ENCFF872XXD.bed.gz.dvc | 101.0 B | 9a23bbcad338e2ac2aaf95b26bf35200 |
| ENCFF872XXD.tabix.bed.gz | 1.13 MB | cdb5e8a76a13124cea08b3336f53d21d |
| ENCFF872XXD.tabix.bed.gz.dvc | 107.0 B | 851d6ed59ed17d2dfcd90bf3a8075dd3 |
| ENCFF872XXD.tabix.bed.gz.tbi | 446.17 KB | 444c46587054ecac700231ac29b690d3 |
| ENCFF872XXD.tabix.bed.gz.tbi.dvc | 110.0 B | efbcfe47a01308ec763ddbd690236261 |
| genomic_resource.yaml | 2.49 KB | 7e3fc32a428fa0a0c131e547c0feb9ed |
| genomic_resource_original.yaml | 2.42 KB | 77a88d432344952a0e50c8ce1a4c3a2b |
| statistics/ |