Resource
| Id | ATAC-seq/ENCSR177JWR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR177JWR [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN450AOG|/analyses/ENCAN450AOG/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260QJK|/files/ENCFF260QJK/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.820635. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260QJK|/files/ENCFF260QJK/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR177JWR | float |
ATAC-seq_ENCSR177JWR |
ATAC-seq ENCSR177JWR [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"]
|
 |
[1.27, 36.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 95151854 | 2.96% | 154195 |
| chr1 | 9086132 | 3.65% | 14480 |
| chr2 | 7411893 | 3.06% | 12407 |
| chr3 | 5919200 | 2.99% | 10004 |
| chr4 | 3877145 | 2.04% | 6741 |
| chr5 | 4972342 | 2.74% | 8487 |
| chr6 | 5148880 | 3.01% | 8648 |
| chr7 | 4860948 | 3.05% | 7997 |
| chr8 | 4005341 | 2.76% | 6804 |
| chr9 | 4311032 | 3.12% | 6916 |
| chr10 | 4831072 | 3.61% | 8056 |
| chr11 | 4938566 | 3.66% | 7750 |
| chr12 | 4567333 | 3.43% | 7489 |
| chr13 | 2292757 | 2.00% | 4008 |
| chr14 | 2924454 | 2.73% | 4703 |
| chr15 | 3360415 | 3.29% | 5448 |
| chr16 | 3541779 | 3.92% | 5333 |
| chr17 | 4728041 | 5.68% | 6932 |
| chr18 | 2038996 | 2.54% | 3571 |
| chr19 | 3744235 | 6.39% | 4966 |
| chr20 | 2727079 | 4.23% | 4353 |
| chr21 | 1323766 | 2.83% | 2113 |
| chr22 | 2311146 | 4.55% | 3493 |
| chrX | 2228357 | 1.43% | 3492 |
| chrY | 945 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 154195 | 150 | 4316 | 617.09 | 491 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF626RXO.bed.gz | 6.0 MB | fc88e9ec395174a045866caad1d5616b |
| ENCFF626RXO.tabix.bed.gz | 1.69 MB | c0a91dfe35725d61af061a6e519423b4 |
| ENCFF626RXO.tabix.bed.gz.tbi | 480.28 KB | 8cf67f8e0de055715c4cb39a34dd0b36 |
| genomic_resource.yaml | 2.6 KB | 1d69e2b89dda3b7a83f11da4584c19e5 |
| statistics/ |