ATAC-seq_ENCSR177JWR
ATAC-seq ENCSR177JWR [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"]
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| Id: | ATAC-seq/ENCSR177JWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR177JWR [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN450AOG|/analyses/ENCAN450AOG/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260QJK|/files/ENCFF260QJK/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.820635. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260QJK|/files/ENCFF260QJK/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR177JWR | float |
ATAC-seq_ENCSR177JWR |
ATAC-seq ENCSR177JWR [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (59 years)"]
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[1.27, 36.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF626RXO.bed.gz | 6.0 MB | fc88e9ec395174a045866caad1d5616b |
| ENCFF626RXO.bed.gz.dvc | 101.0 B | 2aef8c5b5f203cab152559827dee00fe |
| ENCFF626RXO.tabix.bed.gz | 1.69 MB | c0a91dfe35725d61af061a6e519423b4 |
| ENCFF626RXO.tabix.bed.gz.dvc | 107.0 B | fff3fb76b7323323797173f62950e1b4 |
| ENCFF626RXO.tabix.bed.gz.tbi | 480.28 KB | 8cf67f8e0de055715c4cb39a34dd0b36 |
| ENCFF626RXO.tabix.bed.gz.tbi.dvc | 110.0 B | c1a005c8cd8c19324c4e43283de96793 |
| genomic_resource.yaml | 2.6 KB | 1d69e2b89dda3b7a83f11da4584c19e5 |
| genomic_resource_original.yaml | 2.49 KB | 66911770c2888446b2aab74e03774a9c |
| statistics/ |