| Id: | ATAC-seq/ENCSR174SUM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR174SUM [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (48 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN790NYJ|/analyses/ENCAN790NYJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF914JEV|/files/ENCFF914JEV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.871037. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF914JEV|/files/ENCFF914JEV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF354BOL|/files/ENCFF354BOL/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.866076. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF354BOL|/files/ENCFF354BOL/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR174SUM | float |
ATAC-seq_ENCSR174SUM |
ATAC-seq ENCSR174SUM [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"]
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[1.23, 43.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF049DNM.bed.gz | 4.69 MB | 45dc681b2e375b85841ea2d304f235ab |
| ENCFF049DNM.bed.gz.dvc | 101.0 B | 6399a230913ed26fec50c1e5272c7d30 |
| ENCFF049DNM.tabix.bed.gz | 1.25 MB | 8e625bcc98dca34b4624f2e001af10ed |
| ENCFF049DNM.tabix.bed.gz.dvc | 107.0 B | 19dd3933c69e45c7d585eee68943a6bb |
| ENCFF049DNM.tabix.bed.gz.tbi | 430.38 KB | c84d6a9c5e357e840453666f6c6f021e |
| ENCFF049DNM.tabix.bed.gz.tbi.dvc | 110.0 B | 0e9bdf0f2a5906d40f84f01cb9527785 |
| genomic_resource.yaml | 4.31 KB | acaa78458113bd18a52e0d3796e1c0cd |
| genomic_resource_original.yaml | 4.1 KB | 3077f27666574d8c34c6fffa2cff09a5 |
| statistics/ |