ATAC-seq_ENCSR167SYF
ATAC-seq ENCSR167SYF [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"]
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| Id: | ATAC-seq/ENCSR167SYF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR167SYF [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN529PRX|/analyses/ENCAN529PRX/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF444DRG|/files/ENCFF444DRG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.13. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF508LPT|/files/ENCFF508LPT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.890993. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF444DRG|/files/ENCFF444DRG/} (overlap peaks) and {ENCFF659MXY|/files/ENCFF659MXY/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 115269 and 50777 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR167SYF | float |
ATAC-seq_ENCSR167SYF |
ATAC-seq ENCSR167SYF [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"]
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[1.28, 27.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF444DRG.bed.gz | 2.68 MB | 212fde4aa12f2a9a8311ede788d9c74c |
| ENCFF444DRG.bed.gz.dvc | 101.0 B | 98d2ff4453ce002e482d1b745d033b4a |
| ENCFF444DRG.tabix.bed.gz | 767.14 KB | 64229a3453f6ae80b941a2c8047005f1 |
| ENCFF444DRG.tabix.bed.gz.dvc | 106.0 B | bc894d524a226a28677adc29e7507160 |
| ENCFF444DRG.tabix.bed.gz.tbi | 359.15 KB | b28999932c2b71d2702bf5ed147b6e55 |
| ENCFF444DRG.tabix.bed.gz.tbi.dvc | 110.0 B | 88c0e6c0138753a0080685527b5bba3f |
| genomic_resource.yaml | 3.25 KB | 26af985c94e27181e354f610835792f3 |
| genomic_resource_original.yaml | 3.15 KB | a15c0b7f558edc156d544f8a2fbfdf02 |
| statistics/ |