ATAC-seq_ENCSR163KRG
ATAC-seq ENCSR163KRG [biosample_summary="Homo sapiens HG03469"]
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| Id: | ATAC-seq/ENCSR163KRG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR163KRG [biosample_summary="Homo sapiens HG03469"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN220NNS|/analyses/ENCAN220NNS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF430HQS|/files/ENCFF430HQS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.820312. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF430HQS|/files/ENCFF430HQS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF187ZKG|/files/ENCFF187ZKG/} (overlap peaks) and {ENCFF505YPT|/files/ENCFF505YPT/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 131170 and 67312 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR163KRG | float |
ATAC-seq_ENCSR163KRG |
ATAC-seq ENCSR163KRG [biosample_summary="Homo sapiens HG03469"]
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[1.68, 39.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF187ZKG.bed.gz | 3.15 MB | 7b91995f196b3e40880860915c318cfb |
| ENCFF187ZKG.bed.gz.dvc | 101.0 B | 00f40690c7519bf2d5756acdaa701048 |
| ENCFF187ZKG.tabix.bed.gz | 1.04 MB | 562265f8a0624493c03451efd776dce3 |
| ENCFF187ZKG.tabix.bed.gz.dvc | 107.0 B | 7bd9c1da828b6cb81935d2b0dc3deff2 |
| ENCFF187ZKG.tabix.bed.gz.tbi | 444.63 KB | c32b1c83140689fa644d7e3013e1f860 |
| ENCFF187ZKG.tabix.bed.gz.tbi.dvc | 110.0 B | 06215afffa7e44c39d4169328a28d05c |
| genomic_resource.yaml | 3.05 KB | 642ccd2158272c30384097c0a4df22e6 |
| genomic_resource_original.yaml | 2.98 KB | 15816fbdd598f687a5af600aec64d3b1 |
| statistics/ |