ATAC-seq_ENCSR159GFS
ATAC-seq ENCSR159GFS [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years)"]
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| Id: | ATAC-seq/ENCSR159GFS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR159GFS [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN882BEC|/analyses/ENCAN882BEC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF456ETK|/files/ENCFF456ETK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 24322709 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF456ETK|/files/ENCFF456ETK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.897686. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF364QVY|/files/ENCFF364QVY/} (overlap peaks) and {ENCFF519QMA|/files/ENCFF519QMA/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 91414 and 57636 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR159GFS | float |
ATAC-seq_ENCSR159GFS |
ATAC-seq ENCSR159GFS [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (42 years)"]
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[1.3, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF364QVY.bed.gz | 2.25 MB | 3f39c30b1d907aaf7226b9afce5e17a7 |
| ENCFF364QVY.bed.gz.dvc | 101.0 B | 6b16f8b7d1e8badda96e9286cb0b5a64 |
| ENCFF364QVY.tabix.bed.gz | 682.95 KB | 2b1e011892998904c283d173a6967792 |
| ENCFF364QVY.tabix.bed.gz.dvc | 106.0 B | 9a6469597912e0f6154cedb73427740a |
| ENCFF364QVY.tabix.bed.gz.tbi | 285.7 KB | c8aee31dcc799828a0eb04b06ff15333 |
| ENCFF364QVY.tabix.bed.gz.tbi.dvc | 110.0 B | 7356789df435549768f2ffcce534495e |
| genomic_resource.yaml | 2.96 KB | 4b5f4f5faa37c8da0d276cf7074b6f47 |
| genomic_resource_original.yaml | 2.82 KB | 996576f39a7e0f10a9a8feaafe330cff |
| statistics/ |