Resource

Id ATAC-seq/ENCSR158KCScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR158KCS [biosample_summary="Homo sapiens spleen tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR158KCS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue female adult (61 years)
  • date_created: 2019-06-02T13:27:49.877714+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR158KCS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR158KCS float

ATAC-seq_ENCSR158KCS
ATAC-seq ENCSR158KCS [biosample_summary="Homo sapiens spleen tissue female adult (61 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR158KCS [1.61, 23.2]
n
73,040,730
mean
3.46
sd
1.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 730407302.27% 117737
chr1 5687942 2.28% 9292
chr2 6549044 2.70% 10764
chr3 5051472 2.55% 8229
chr4 4439839 2.33% 6950
chr5 4626984 2.55% 7442
chr6 4654212 2.72% 7639
chr7 4470615 2.81% 7087
chr8 3751380 2.58% 6098
chr9 2868631 2.07% 4640
chr10 3736031 2.79% 6121
chr11 3432163 2.54% 5539
chr12 3388519 2.54% 5476
chr13 2347228 2.05% 3733
chr14 2103971 1.97% 3307
chr15 1837046 1.80% 3040
chr16 1875670 2.08% 3069
chr17 2233151 2.68% 3564
chr18 2061997 2.57% 3437
chr19 1936151 3.30% 2975
chr20 1523005 2.36% 2599
chr21 905168 1.94% 1442
chr22 1019906 2.01% 1622
chrX 2538329 1.63% 3663
chrY 2276 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117737 150 3236 620.37 528
global segment-length histogram

Files

Filename Size md5
ENCFF638DVO.bed.gz 4.18 MB f56c2cc2a985eb265f02c9e3450d1553
ENCFF638DVO.tabix.bed.gz 1.28 MB 2aeb2af6efc7925feeded26548dcce95
ENCFF638DVO.tabix.bed.gz.tbi 524.3 KB 0c663ba8f3940e21cbc3f156f6415450
genomic_resource.yaml 2.17 KB 802f6607a3ca943d1cbb38eeee966c51
statistics/