Resource
| Id | ATAC-seq/ENCSR157OSO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR157OSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (47 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN712SLZ|/analyses/ENCAN712SLZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN712SLZ|/analyses/ENCAN712SLZ/} has in progress subobject document {11f96411-f920-43e1-86c0-51ba1fa3687c|/documents/11f96411-f920-43e1-86c0-51ba1fa3687c/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF658MBG|/files/ENCFF658MBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.757029. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF658MBG|/files/ENCFF658MBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR157OSO | float |
ATAC-seq_ENCSR157OSO |
ATAC-seq ENCSR157OSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (47 years)"]
|
 |
[1.2, 33.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70913936 | 2.20% | 115423 |
| chr1 | 6993458 | 2.81% | 11174 |
| chr2 | 5558695 | 2.30% | 9329 |
| chr3 | 4307890 | 2.17% | 7202 |
| chr4 | 2765211 | 1.45% | 4775 |
| chr5 | 3685935 | 2.03% | 6245 |
| chr6 | 3689543 | 2.16% | 6282 |
| chr7 | 3569416 | 2.24% | 5941 |
| chr8 | 2965638 | 2.04% | 5080 |
| chr9 | 3081757 | 2.23% | 4908 |
| chr10 | 3534928 | 2.64% | 5952 |
| chr11 | 3720563 | 2.75% | 5909 |
| chr12 | 3341424 | 2.51% | 5409 |
| chr13 | 1637807 | 1.43% | 2843 |
| chr14 | 2157304 | 2.02% | 3426 |
| chr15 | 2575092 | 2.52% | 4224 |
| chr16 | 2807942 | 3.11% | 4344 |
| chr17 | 3587050 | 4.31% | 5401 |
| chr18 | 1489874 | 1.85% | 2629 |
| chr19 | 3123942 | 5.33% | 4303 |
| chr20 | 1987759 | 3.08% | 3268 |
| chr21 | 941199 | 2.01% | 1537 |
| chr22 | 1883969 | 3.71% | 2898 |
| chrX | 1506519 | 0.97% | 2339 |
| chrY | 1021 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 115423 | 150 | 3697 | 614.38 | 488 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF535VTB.bed.gz | 4.89 MB | b7416f23b536b62b21d8188f9c2b0037 |
| ENCFF535VTB.tabix.bed.gz | 1.27 MB | 2e14632beaa4d6ae7301610f92bb8b88 |
| ENCFF535VTB.tabix.bed.gz.tbi | 405.64 KB | f23e64323eba38a80eb960524a95ced5 |
| genomic_resource.yaml | 2.82 KB | a6f476f26266773ae8fab607d0ba1eb8 |
| statistics/ |