ATAC-seq_ENCSR157OSO
ATAC-seq ENCSR157OSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR157OSO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR157OSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN712SLZ|/analyses/ENCAN712SLZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN712SLZ|/analyses/ENCAN712SLZ/} has in progress subobject document {11f96411-f920-43e1-86c0-51ba1fa3687c|/documents/11f96411-f920-43e1-86c0-51ba1fa3687c/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF658MBG|/files/ENCFF658MBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.757029. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF658MBG|/files/ENCFF658MBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR157OSO | float |
ATAC-seq_ENCSR157OSO |
ATAC-seq ENCSR157OSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (47 years)"]
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[1.2, 33.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF535VTB.bed.gz | 4.89 MB | b7416f23b536b62b21d8188f9c2b0037 |
| ENCFF535VTB.bed.gz.dvc | 101.0 B | 81f5c3c15f3f185d2f44f8129aa3eb92 |
| ENCFF535VTB.tabix.bed.gz | 1.27 MB | 2e14632beaa4d6ae7301610f92bb8b88 |
| ENCFF535VTB.tabix.bed.gz.dvc | 107.0 B | 00b41c82c28ad449c3ed7940a3f3e47c |
| ENCFF535VTB.tabix.bed.gz.tbi | 405.64 KB | f23e64323eba38a80eb960524a95ced5 |
| ENCFF535VTB.tabix.bed.gz.tbi.dvc | 110.0 B | 0736a6063929c99ce4491365ccb778db |
| genomic_resource.yaml | 2.82 KB | a6f476f26266773ae8fab607d0ba1eb8 |
| genomic_resource_original.yaml | 2.71 KB | 7d39fd5f90118632fb1bff94b0f57086 |
| statistics/ |