Resource

Id ATAC-seq/ENCSR156FDXcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR156FDX [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
Description
Labels
  • accession: ENCSR156FDX
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • date_created: 2016-10-12T18:04:06.585704+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR156FDX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR156FDX float

ATAC-seq_ENCSR156FDX
ATAC-seq ENCSR156FDX [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
 HISTOGRAM FOR ATAC-seq_ENCSR156FDX [1.68, 32]
n
34,459,879
mean
6.92
sd
3.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 344598791.07% 83515
chr1 3136539 1.26% 7533
chr2 2825237 1.17% 6955
chr3 2291316 1.16% 5616
chr4 1642366 0.86% 4087
chr5 1878180 1.03% 4670
chr6 2105631 1.23% 5135
chr7 1884751 1.18% 4608
chr8 1685078 1.16% 4143
chr9 1409862 1.02% 3447
chr10 1672456 1.25% 4084
chr11 1700405 1.26% 4161
chr12 1674003 1.26% 4061
chr13 832918 0.73% 2035
chr14 1061234 0.99% 2562
chr15 1075733 1.05% 2615
chr16 1167940 1.29% 2695
chr17 1426446 1.71% 3316
chr18 796990 0.99% 1986
chr19 1277207 2.18% 2704
chr20 902320 1.40% 2243
chr21 416451 0.89% 982
chr22 558806 1.10% 1301
chrX 1037795 0.67% 2575
chrY 215 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83515 150 2950 412.62 346
global segment-length histogram

Files

Filename Size md5
ENCFF278TVY.bed.gz 2.61 MB b7e27e771b063157eed4144d2739ea55
ENCFF278TVY.tabix.bed.gz 920.71 KB 0dfd7c63e780f560a092ec128b59d6e4
ENCFF278TVY.tabix.bed.gz.tbi 391.21 KB 8603d4f011bbd16051bebb5b277a6c49
genomic_resource.yaml 1.59 KB 2f04f9b342cdb7ee57ba3ec97c7d7220
statistics/