Resource

Id ATAC-seq/ENCSR154UWNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR154UWN [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR154UWN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female child (16 years)
  • date_created: 2019-05-25T07:45:23.647711+00:00
  • date_released: 2022-02-09
  • doi: 10.17989/ENCSR154UWN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR154UWN float

ATAC-seq_ENCSR154UWN

ATAC-seq ENCSR154UWN [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR154UWN [1.37, 35.8]
n
42,890,600
mean
6.24
sd
3.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428906001.33% 86624
chr1 4308589 1.73% 8584
chr2 3484846 1.44% 7217
chr3 2769761 1.40% 5750
chr4 1706918 0.90% 3637
chr5 2138439 1.18% 4438
chr6 2484224 1.45% 5153
chr7 2145519 1.35% 4463
chr8 1752358 1.21% 3666
chr9 1873854 1.35% 3774
chr10 2139853 1.60% 4454
chr11 2227925 1.65% 4419
chr12 1990927 1.49% 3954
chr13 940326 0.82% 1940
chr14 1351518 1.26% 2684
chr15 1550274 1.52% 3151
chr16 1599611 1.77% 3066
chr17 2174388 2.61% 4140
chr18 834724 1.04% 1793
chr19 1712980 2.92% 2990
chr20 1138359 1.77% 2317
chr21 549324 1.18% 1088
chr22 1029183 2.03% 1970
chrX 985801 0.63% 1972
chrY 899 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86624 150 2603 495.14 393
global segment-length histogram

Files

Filename Size md5
ENCFF616OVJ.bed.gz 3.2 MB 5acecb3a87309bb42349cab9fc84fa9f
ENCFF616OVJ.tabix.bed.gz 971.82 KB 809a2d3d963e5916600c6b8a1e0b4605
ENCFF616OVJ.tabix.bed.gz.tbi 377.1 KB 128d295b070b6949c175261631aab097
genomic_resource.yaml 1.42 KB 4bc023adc304466eef31ee967d511a7a
statistics/