Resource

Id ATAC-seq/ENCSR153IUBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR153IUB [biosample_summary="Homo sapiens mucosa of urinary bladder tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR153IUB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001259/
  • biosample_summary: Homo sapiens mucosa of urinary bladder tissue male adult (26 years)
  • date_created: 2019-05-29T04:29:23.126437+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR153IUB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR153IUB float

ATAC-seq_ENCSR153IUB
ATAC-seq ENCSR153IUB [biosample_summary="Homo sapiens mucosa of urinary bladder tissue male adult (26 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR153IUB [1.24, 29.6]
n
78,377,802
mean
5.47
sd
2.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 783778022.44% 123159
chr1 7741334 3.11% 11881
chr2 6164818 2.55% 9934
chr3 4692606 2.37% 7656
chr4 3322501 1.75% 5531
chr5 3840584 2.12% 6266
chr6 4455943 2.61% 7127
chr7 3970984 2.49% 6281
chr8 3393262 2.34% 5592
chr9 3427174 2.48% 5368
chr10 3799528 2.84% 6039
chr11 4132113 3.06% 6417
chr12 3602938 2.70% 5665
chr13 1839576 1.61% 3030
chr14 2513905 2.35% 3935
chr15 2727234 2.67% 4235
chr16 2880916 3.19% 4239
chr17 3873149 4.65% 5610
chr18 1680783 2.09% 2825
chr19 3189898 5.44% 4407
chr20 2248119 3.49% 3529
chr21 1101029 2.36% 1696
chr22 1750178 3.44% 2544
chrX 1852890 1.19% 3004
chrY 176340 0.31% 348
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 123159 150 3581 636.4 504
global segment-length histogram

Files

Filename Size md5
ENCFF856OJT.bed.gz 5.52 MB dc0eb737961381bf3cb76064f33d7156
ENCFF856OJT.tabix.bed.gz 1.37 MB a3ca4273ee4be3cf882233406075c472
ENCFF856OJT.tabix.bed.gz.tbi 454.54 KB 385915e6e20d4776209808e9899e92a1
genomic_resource.yaml 1.66 KB f64e71408bf8e108d2d5f9c325d97431
statistics/