Resource

Id ATAC-seq/ENCSR152PSAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR152PSA [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR152PSA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue male adult (37 years)
  • date_created: 2016-11-01T02:34:27.152880+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR152PSA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR152PSA float

ATAC-seq_ENCSR152PSA
ATAC-seq ENCSR152PSA [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR152PSA [1.53, 30.2]
n
42,513,995
mean
6.05
sd
2.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 425139951.32% 74585
chr1 4219356 1.69% 7286
chr2 3320336 1.37% 5901
chr3 2633657 1.33% 4747
chr4 1932300 1.02% 3511
chr5 2184205 1.20% 3925
chr6 2520580 1.48% 4420
chr7 2234896 1.40% 3990
chr8 1871241 1.29% 3343
chr9 1857093 1.34% 3219
chr10 2086785 1.56% 3776
chr11 2225865 1.65% 3877
chr12 2089661 1.57% 3671
chr13 1006918 0.88% 1808
chr14 1430737 1.34% 2501
chr15 1399713 1.37% 2480
chr16 1507473 1.67% 2534
chr17 2002187 2.40% 3344
chr18 876562 1.09% 1609
chr19 1703621 2.91% 2711
chr20 1044299 1.62% 1850
chr21 546918 1.17% 956
chr22 862289 1.70% 1481
chrX 896162 0.57% 1524
chrY 61141 0.11% 121
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74585 150 3232 570.01 465
global segment-length histogram

Files

Filename Size md5
ENCFF463AVI.bed.gz 3.1 MB ee7d319e7aaffc0d5902781536f07b61
ENCFF463AVI.tabix.bed.gz 847.31 KB 8e5c01eeba38f3cff2cbaba43c6b6658
ENCFF463AVI.tabix.bed.gz.tbi 366.82 KB 423f42106642818c33cfc9430873bf5f
genomic_resource.yaml 1.63 KB b895f061ea4bcbe10bc7896426e7a2aa
statistics/