ATAC-seq_ENCSR144ZXR
ATAC-seq ENCSR144ZXR [biosample_summary="Homo sapiens HG02759"]
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| Id: | ATAC-seq/ENCSR144ZXR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR144ZXR [biosample_summary="Homo sapiens HG02759"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN823UEA|/analyses/ENCAN823UEA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687QML|/files/ENCFF687QML/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.758255. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687QML|/files/ENCFF687QML/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR144ZXR | float |
ATAC-seq_ENCSR144ZXR |
ATAC-seq ENCSR144ZXR [biosample_summary="Homo sapiens HG02759"]
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[1.4, 46.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF553NML.bed.gz | 4.44 MB | 7bc6a42fb8c91f51ca2ea6811878ccfd |
| ENCFF553NML.bed.gz.dvc | 101.0 B | 0ea106b0425d5210567028f1bf7eb0d3 |
| ENCFF553NML.tabix.bed.gz | 1.25 MB | 7c9afd5c7042129cce8f151b10effd2f |
| ENCFF553NML.tabix.bed.gz.dvc | 107.0 B | cd20526dfeb057b83cce188df1962b30 |
| ENCFF553NML.tabix.bed.gz.tbi | 489.25 KB | 5d7e4cfd202bff39d81d554a522bd531 |
| ENCFF553NML.tabix.bed.gz.tbi.dvc | 110.0 B | 195203b9f47ba3965b4ec34edc228fb6 |
| genomic_resource.yaml | 2.49 KB | eea4a7af430ba5d55aa76226e03ecd8a |
| genomic_resource_original.yaml | 2.42 KB | 3c726784f33d94df1a136a3d6d350802 |
| statistics/ |