Resource

Id ATAC-seq/ENCSR134OSRcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR134OSR [biosample_summary="Homo sapiens GM19438"]
Description
Labels
  • accession: ENCSR134OSR
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026824/
  • biosample_summary: Homo sapiens GM19438
  • date_created: 2020-11-24T22:02:38.520507+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR134OSR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR134OSR float

ATAC-seq_ENCSR134OSR
ATAC-seq ENCSR134OSR [biosample_summary="Homo sapiens GM19438"]
 HISTOGRAM FOR ATAC-seq_ENCSR134OSR [1.64, 29.6]
n
50,476,925
mean
6.97
sd
3.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 504769251.57% 91254
chr1 4551391 1.83% 8169
chr2 4423435 1.83% 8173
chr3 3503220 1.77% 6498
chr4 2847341 1.50% 5384
chr5 3018567 1.66% 5540
chr6 3363051 1.97% 6082
chr7 2799959 1.76% 5132
chr8 2473563 1.70% 4572
chr9 2053922 1.48% 3757
chr10 2473021 1.85% 4472
chr11 2474271 1.83% 4440
chr12 2473608 1.86% 4431
chr13 1330263 1.16% 2433
chr14 1566086 1.46% 2792
chr15 1462387 1.43% 2579
chr16 1437070 1.59% 2424
chr17 1715931 2.06% 2927
chr18 1097719 1.37% 2065
chr19 1433765 2.45% 2273
chr20 1084617 1.68% 1969
chr21 457437 0.98% 763
chr22 641360 1.26% 1083
chrX 1794609 1.15% 3295
chrY 332 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91254 150 2879 553.15 459
global segment-length histogram

Files

Filename Size md5
ENCFF104JSS.bed.gz 3.61 MB 421613edb9cf398286e45e2cb73071ca
ENCFF104JSS.tabix.bed.gz 1022.4 KB fc9dc860fbac3764ffa32001068e2a56
ENCFF104JSS.tabix.bed.gz.tbi 423.0 KB f44b21057c4dc4019c8a6c928bafee0c
genomic_resource.yaml 1.66 KB d83d5fbb1ed1072fc1792389e83669ff
statistics/