ATAC-seq_ENCSR133CMC
ATAC-seq ENCSR133CMC [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
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| Id: | ATAC-seq/ENCSR133CMC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR133CMC [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN828GYP|/analyses/ENCAN828GYP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN828GYP|/analyses/ENCAN828GYP/} has in progress subobject document {c4d1c3f3-15cf-483c-9975-b3a5c184677a|/documents/c4d1c3f3-15cf-483c-9975-b3a5c184677a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF219SJO|/files/ENCFF219SJO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86039. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF219SJO|/files/ENCFF219SJO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR133CMC | float |
ATAC-seq_ENCSR133CMC |
ATAC-seq ENCSR133CMC [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
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[1.31, 38.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442JHH.bed.gz | 5.6 MB | dd759da05bdc2bcbc4129ed36653ca76 |
| ENCFF442JHH.bed.gz.dvc | 101.0 B | 2940287e64aed7bc374f1676c8d60fae |
| ENCFF442JHH.tabix.bed.gz | 1.61 MB | b6537e2ec977c92164b705702800c3ae |
| ENCFF442JHH.tabix.bed.gz.dvc | 107.0 B | 61f5e8c6191618f215032c403929e4ca |
| ENCFF442JHH.tabix.bed.gz.tbi | 468.43 KB | 6f762d21e47618c81b4e287a6d3975fb |
| ENCFF442JHH.tabix.bed.gz.tbi.dvc | 110.0 B | b2d37bb1416b3aa0be0afb3fe74a7120 |
| genomic_resource.yaml | 2.8 KB | 9971cf61c6a99bf77ecf899fd948e7b7 |
| genomic_resource_original.yaml | 2.7 KB | 365f60d60084291858d275ac65d8e3a2 |
| statistics/ |