Resource
| Id | ATAC-seq/ENCSR133CMC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR133CMC [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN828GYP|/analyses/ENCAN828GYP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN828GYP|/analyses/ENCAN828GYP/} has in progress subobject document {c4d1c3f3-15cf-483c-9975-b3a5c184677a|/documents/c4d1c3f3-15cf-483c-9975-b3a5c184677a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF219SJO|/files/ENCFF219SJO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86039. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF219SJO|/files/ENCFF219SJO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR133CMC | float |
ATAC-seq_ENCSR133CMC |
ATAC-seq ENCSR133CMC [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
|
 |
[1.31, 38.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 76857806 | 2.39% | 148170 |
| chr1 | 7525840 | 3.02% | 14347 |
| chr2 | 6137752 | 2.53% | 12160 |
| chr3 | 5008415 | 2.53% | 9891 |
| chr4 | 3328575 | 1.75% | 6765 |
| chr5 | 4159650 | 2.29% | 8262 |
| chr6 | 4374299 | 2.56% | 8661 |
| chr7 | 3837746 | 2.41% | 7558 |
| chr8 | 3350318 | 2.31% | 6696 |
| chr9 | 3273975 | 2.37% | 6205 |
| chr10 | 3925855 | 2.93% | 7745 |
| chr11 | 4019940 | 2.98% | 7484 |
| chr12 | 3677510 | 2.76% | 7074 |
| chr13 | 1924880 | 1.68% | 3909 |
| chr14 | 2330411 | 2.18% | 4409 |
| chr15 | 2739963 | 2.69% | 5269 |
| chr16 | 2749358 | 3.04% | 5038 |
| chr17 | 3613424 | 4.34% | 6498 |
| chr18 | 1670030 | 2.08% | 3459 |
| chr19 | 2757240 | 4.70% | 4532 |
| chr20 | 2059094 | 3.20% | 3936 |
| chr21 | 964079 | 2.06% | 1829 |
| chr22 | 1718062 | 3.38% | 3147 |
| chrX | 1632905 | 1.05% | 3117 |
| chrY | 78485 | 0.14% | 179 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148170 | 150 | 2816 | 518.71 | 413 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF442JHH.bed.gz | 5.6 MB | dd759da05bdc2bcbc4129ed36653ca76 |
| ENCFF442JHH.tabix.bed.gz | 1.61 MB | b6537e2ec977c92164b705702800c3ae |
| ENCFF442JHH.tabix.bed.gz.tbi | 468.43 KB | 6f762d21e47618c81b4e287a6d3975fb |
| genomic_resource.yaml | 2.8 KB | 9971cf61c6a99bf77ecf899fd948e7b7 |
| statistics/ |