ATAC-seq_ENCSR131HOY
ATAC-seq ENCSR131HOY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR131HOY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR131HOY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN046FVR|/analyses/ENCAN046FVR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF347EQI|/files/ENCFF347EQI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.460297. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF347EQI|/files/ENCFF347EQI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.42. audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF275GRM|/files/ENCFF275GRM/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.455439. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF275GRM|/files/ENCFF275GRM/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.42. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed file {ENCFF347EQI|/files/ENCFF347EQI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC2 value of 1.55. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed file {ENCFF275GRM|/files/ENCFF275GRM/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC2 value of 1.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR131HOY | float |
ATAC-seq_ENCSR131HOY |
ATAC-seq ENCSR131HOY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.26, 40.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF497ACM.bed.gz | 5.95 MB | 3b19070c6f50754d2586086d492d9c62 |
| ENCFF497ACM.bed.gz.dvc | 101.0 B | 9821fab43f8fb6d518d303978f9d6c30 |
| ENCFF497ACM.tabix.bed.gz | 1.68 MB | 8689f2393012434e9968a7016d495583 |
| ENCFF497ACM.tabix.bed.gz.dvc | 107.0 B | 880f6823b02b386f03f7ff038442f28e |
| ENCFF497ACM.tabix.bed.gz.tbi | 569.03 KB | 87cd717998d340a10f044215ec9a61aa |
| ENCFF497ACM.tabix.bed.gz.tbi.dvc | 110.0 B | 568b2b81ae2b710ce1acf37c5242c822 |
| genomic_resource.yaml | 5.11 KB | 8254a619591ab7cb842a7a9ae55c009c |
| genomic_resource_original.yaml | 4.99 KB | 1398117f1be358b03040b6a104bed6ae |
| statistics/ |