ATAC-seq_ENCSR124NNL
ATAC-seq ENCSR124NNL [biosample_summary="Homo sapiens liver tissue male adult (67 years)"]
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| Id: | ATAC-seq/ENCSR124NNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR124NNL [biosample_summary="Homo sapiens liver tissue male adult (67 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (67 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN568CIG|/analyses/ENCAN568CIG/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF488BRH|/files/ENCFF488BRH/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.14. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF640ZNR|/files/ENCFF640ZNR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.892239. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF640ZNR|/files/ENCFF640ZNR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR124NNL | float |
ATAC-seq_ENCSR124NNL |
ATAC-seq ENCSR124NNL [biosample_summary="Homo sapiens liver tissue male adult (67 years)"]
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[1.35, 33.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF488BRH.bed.gz | 4.7 MB | b381f3c92a566de0df2457e0c939b497 |
| ENCFF488BRH.bed.gz.dvc | 101.0 B | db190c31b6718c8b6fe6bc9e29c757d3 |
| ENCFF488BRH.tabix.bed.gz | 1.48 MB | 1aa97d6741fb57fbb72f5f29ade45ce5 |
| ENCFF488BRH.tabix.bed.gz.dvc | 107.0 B | fb170dcf76be4e41d57f92978fc2b94b |
| ENCFF488BRH.tabix.bed.gz.tbi | 487.93 KB | 964fb894b1fd56a8b3915f7fbd8e0c22 |
| ENCFF488BRH.tabix.bed.gz.tbi.dvc | 110.0 B | e928a144301cbad1abb9a098f7718a9c |
| genomic_resource.yaml | 3.31 KB | 8a7403b2571d78fe47c43a2709b6d3ac |
| genomic_resource_original.yaml | 3.22 KB | 017b142770ff6c6efd0ec8bdce6046a1 |
| statistics/ |