ATAC-seq_ENCSR123WME
ATAC-seq ENCSR123WME [biosample_summary="Homo sapiens HG02943"]
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| Id: | ATAC-seq/ENCSR123WME |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR123WME [biosample_summary="Homo sapiens HG02943"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN469ZFM|/analyses/ENCAN469ZFM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF657AXO|/files/ENCFF657AXO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 24650809 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF657AXO|/files/ENCFF657AXO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.884005. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF657AXO|/files/ENCFF657AXO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR123WME | float |
ATAC-seq_ENCSR123WME |
ATAC-seq ENCSR123WME [biosample_summary="Homo sapiens HG02943"]
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[1.39, 36.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF304OUP.bed.gz | 3.09 MB | 7fed5bcfc43a9fd1265004498ca3fb8e |
| ENCFF304OUP.bed.gz.dvc | 101.0 B | 33a7d06dac96d71f0b504a4e1bb47350 |
| ENCFF304OUP.tabix.bed.gz | 848.6 KB | 94e1783d1324993f111e3c3107611bae |
| ENCFF304OUP.tabix.bed.gz.dvc | 106.0 B | 632b178cee08def353efd0d68f9d6ecd |
| ENCFF304OUP.tabix.bed.gz.tbi | 370.13 KB | e1aa2328ba5e8c4fc1625b66495199af |
| ENCFF304OUP.tabix.bed.gz.tbi.dvc | 110.0 B | f51e94056079390650d1bdc32826b9fc |
| genomic_resource.yaml | 2.86 KB | 9b4582d30287d22b1a45689b35c66346 |
| genomic_resource_original.yaml | 2.79 KB | bd715c1c7bcb4aa84d1486a6e24d2817 |
| statistics/ |