ATAC-seq_ENCSR122NDR
ATAC-seq ENCSR122NDR [biosample_summary="Homo sapiens GM21576"]
×
| Id: | ATAC-seq/ENCSR122NDR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR122NDR [biosample_summary="Homo sapiens GM21576"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN670HOM|/analyses/ENCAN670HOM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF557GPJ|/files/ENCFF557GPJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.761451. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF557GPJ|/files/ENCFF557GPJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR122NDR | float |
ATAC-seq_ENCSR122NDR |
ATAC-seq ENCSR122NDR [biosample_summary="Homo sapiens GM21576"]
|
|
[1.33, 33.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF338XWC.bed.gz | 3.73 MB | 2e8a9f227a84422205b5417a26bc16d3 |
| ENCFF338XWC.bed.gz.dvc | 101.0 B | bb57131f891c12bd940e5637beb50977 |
| ENCFF338XWC.tabix.bed.gz | 1.1 MB | 2e08852fda2b660a847e6f70eeb3e2b4 |
| ENCFF338XWC.tabix.bed.gz.dvc | 107.0 B | 114d2fad289d8efd565cbf58ab71f1a7 |
| ENCFF338XWC.tabix.bed.gz.tbi | 445.65 KB | 0d7d3268bcd26b548922388ce7246d6c |
| ENCFF338XWC.tabix.bed.gz.tbi.dvc | 110.0 B | b3b92c765c546eac194f1b89ca55fafb |
| genomic_resource.yaml | 2.49 KB | 8e1791c3b67cf56fb3dbeec27e0d6d3a |
| genomic_resource_original.yaml | 2.42 KB | 7dc58328482029c0ad5e890930e142f9 |
| statistics/ |