Resource
| Id | ATAC-seq/ENCSR120MOY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR120MOY [biosample_summary="Homo sapiens sciatic nerve tissue male adult (26 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN800BRH|/analyses/ENCAN800BRH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN800BRH|/analyses/ENCAN800BRH/} has in progress subobject document {162c7e38-ffb8-446d-8eef-142cd5b76714|/documents/162c7e38-ffb8-446d-8eef-142cd5b76714/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF865MFD|/files/ENCFF865MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.868555. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF865MFD|/files/ENCFF865MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR120MOY | float |
ATAC-seq_ENCSR120MOY |
ATAC-seq ENCSR120MOY [biosample_summary="Homo sapiens sciatic nerve tissue male adult (26 years)"]
|
 |
[1.31, 33] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 85710073 | 2.66% | 164064 |
| chr1 | 8075164 | 3.24% | 15140 |
| chr2 | 6910704 | 2.85% | 13440 |
| chr3 | 5468401 | 2.76% | 10753 |
| chr4 | 3528582 | 1.86% | 7238 |
| chr5 | 4570484 | 2.52% | 9073 |
| chr6 | 5078214 | 2.97% | 9936 |
| chr7 | 4336852 | 2.72% | 8515 |
| chr8 | 3783222 | 2.61% | 7509 |
| chr9 | 3783716 | 2.73% | 7164 |
| chr10 | 4373435 | 3.27% | 8428 |
| chr11 | 4406263 | 3.26% | 8165 |
| chr12 | 4171480 | 3.13% | 7957 |
| chr13 | 2151857 | 1.88% | 4338 |
| chr14 | 2806191 | 2.62% | 5368 |
| chr15 | 2957433 | 2.90% | 5647 |
| chr16 | 2947826 | 3.26% | 5380 |
| chr17 | 4105152 | 4.93% | 7323 |
| chr18 | 1806206 | 2.25% | 3660 |
| chr19 | 3008990 | 5.13% | 4962 |
| chr20 | 2382997 | 3.70% | 4516 |
| chr21 | 1236593 | 2.65% | 2371 |
| chr22 | 1882319 | 3.70% | 3413 |
| chrX | 1862419 | 1.19% | 3608 |
| chrY | 75573 | 0.13% | 160 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 164064 | 150 | 3178 | 522.42 | 415 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF830CUE.bed.gz | 5.86 MB | 15cf9241933d7e34e16c3b02d31ee08b |
| ENCFF830CUE.tabix.bed.gz | 1.77 MB | e2052bd8e1768d330091c9b37e6c3208 |
| ENCFF830CUE.tabix.bed.gz.tbi | 510.94 KB | 6a1ed4aa018b2c0e06f55f958198cb9d |
| genomic_resource.yaml | 2.78 KB | 8b5a2fb2f809d5b59ae7bc9d6a72b86e |
| statistics/ |