ATAC-seq_ENCSR120MOY
ATAC-seq ENCSR120MOY [biosample_summary="Homo sapiens sciatic nerve tissue male adult (26 years)"]
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| Id: | ATAC-seq/ENCSR120MOY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR120MOY [biosample_summary="Homo sapiens sciatic nerve tissue male adult (26 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN800BRH|/analyses/ENCAN800BRH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN800BRH|/analyses/ENCAN800BRH/} has in progress subobject document {162c7e38-ffb8-446d-8eef-142cd5b76714|/documents/162c7e38-ffb8-446d-8eef-142cd5b76714/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF865MFD|/files/ENCFF865MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.868555. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF865MFD|/files/ENCFF865MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR120MOY | float |
ATAC-seq_ENCSR120MOY |
ATAC-seq ENCSR120MOY [biosample_summary="Homo sapiens sciatic nerve tissue male adult (26 years)"]
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[1.31, 33] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF830CUE.bed.gz | 5.86 MB | 15cf9241933d7e34e16c3b02d31ee08b |
| ENCFF830CUE.bed.gz.dvc | 101.0 B | 9e523b6342232712ac06c685201ef472 |
| ENCFF830CUE.tabix.bed.gz | 1.77 MB | e2052bd8e1768d330091c9b37e6c3208 |
| ENCFF830CUE.tabix.bed.gz.dvc | 107.0 B | bd4a346c22ed3a2222e90dc867f34dc3 |
| ENCFF830CUE.tabix.bed.gz.tbi | 510.94 KB | 6a1ed4aa018b2c0e06f55f958198cb9d |
| ENCFF830CUE.tabix.bed.gz.tbi.dvc | 110.0 B | 9f0382b0b0b47081b7fff8e6bab11416 |
| genomic_resource.yaml | 2.78 KB | 8b5a2fb2f809d5b59ae7bc9d6a72b86e |
| genomic_resource_original.yaml | 2.68 KB | 50acb990e0897dbc91e54c819324b70b |
| statistics/ |