| Id: | ATAC-seq/ENCSR115OIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR115OIV [biosample_summary="Homo sapiens activated T-helper 17 cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours output_type: replicated peaks audit_internal_action: Released analysis {ENCAN746JJI|/analyses/ENCAN746JJI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF932ZST|/files/ENCFF932ZST/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.827891. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF932ZST|/files/ENCFF932ZST/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF825QCZ|/files/ENCFF825QCZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.839611. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF825QCZ|/files/ENCFF825QCZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR115OIV | float |
ATAC-seq_ENCSR115OIV |
ATAC-seq ENCSR115OIV [biosample_summary="Homo sapiens activated T-helper 17 cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"]
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[1.22, 42.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF123QHV.bed.gz | 4.67 MB | 99726b560ed9eea7e2362f21ad11d555 |
| ENCFF123QHV.bed.gz.dvc | 101.0 B | a7a36a80e966d8bf959674cd26be3f99 |
| ENCFF123QHV.tabix.bed.gz | 1.34 MB | 9ade2a53f72961c9cd367ccd1ef335d0 |
| ENCFF123QHV.tabix.bed.gz.dvc | 107.0 B | bc4e662a7dc631a398fc7f598ebb4b16 |
| ENCFF123QHV.tabix.bed.gz.tbi | 427.75 KB | f83dbbf49fa02f0cee30421a3f0e08f0 |
| ENCFF123QHV.tabix.bed.gz.tbi.dvc | 110.0 B | 99e1c0d5e170ca22dc817cbfa20814e1 |
| genomic_resource.yaml | 4.25 KB | f22f5faa068ac7904a0eca2b720de542 |
| genomic_resource_original.yaml | 4.05 KB | 38e98b402b92c09f6114e58bb200ae4a |
| statistics/ |