ATAC-seq_ENCSR105SCQ
ATAC-seq ENCSR105SCQ [biosample_summary="Homo sapiens GM21360"]
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| Id: | ATAC-seq/ENCSR105SCQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR105SCQ [biosample_summary="Homo sapiens GM21360"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN655EAQ|/analyses/ENCAN655EAQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN655EAQ|/analyses/ENCAN655EAQ/} has in progress subobject document {b6b7ba0b-3553-4198-b222-d4d07354a2f7|/documents/b6b7ba0b-3553-4198-b222-d4d07354a2f7/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF991ZNJ|/files/ENCFF991ZNJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.718356. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF991ZNJ|/files/ENCFF991ZNJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR105SCQ | float |
ATAC-seq_ENCSR105SCQ |
ATAC-seq ENCSR105SCQ [biosample_summary="Homo sapiens GM21360"]
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[1.51, 33.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF091ELX.bed.gz | 3.7 MB | 97b67dc632e3e8b2b685f670c5e524fd |
| ENCFF091ELX.bed.gz.dvc | 101.0 B | fb8884fe3118a329f068cbc92df742ae |
| ENCFF091ELX.tabix.bed.gz | 1.08 MB | 2d482ef52ef6d49eb1db978db7a3d5b6 |
| ENCFF091ELX.tabix.bed.gz.dvc | 107.0 B | b851674d6e5c828070c8d1a531d97b90 |
| ENCFF091ELX.tabix.bed.gz.tbi | 446.58 KB | 677b90467e276cfc669549e6b2c1fead |
| ENCFF091ELX.tabix.bed.gz.tbi.dvc | 110.0 B | 05b7871bfb73b528d340f0f59d13265f |
| genomic_resource.yaml | 2.71 KB | 479bf72a4331a4e8a90b2ad8fb7e1324 |
| genomic_resource_original.yaml | 2.64 KB | a98179c5082ae83c3a605851d7b47e29 |
| statistics/ |