ATAC-seq_ENCSR102RXG
ATAC-seq ENCSR102RXG [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
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| Id: | ATAC-seq/ENCSR102RXG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR102RXG [biosample_summary="Homo sapiens T-cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN662KJC|/analyses/ENCAN662KJC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF476TCF|/files/ENCFF476TCF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.878535. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF476TCF|/files/ENCFF476TCF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR102RXG | float |
ATAC-seq_ENCSR102RXG |
ATAC-seq ENCSR102RXG [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
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[1.25, 44.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF058UYY.bed.gz | 2.79 MB | 7d1ef1542038ca339bfb950339d4ad4b |
| ENCFF058UYY.bed.gz.dvc | 101.0 B | dc73aba0c5dbc2dd301caaeb64c826e6 |
| ENCFF058UYY.tabix.bed.gz | 734.0 KB | c007e011a7cde9ebe4ff634b1d4aac15 |
| ENCFF058UYY.tabix.bed.gz.dvc | 106.0 B | d8d9c5c709e14a059948354fc3ae4a5f |
| ENCFF058UYY.tabix.bed.gz.tbi | 293.73 KB | 06c6072f0411a165829df067bb97cac4 |
| ENCFF058UYY.tabix.bed.gz.tbi.dvc | 110.0 B | 334ec98989562f84470ee2cd506dda07 |
| genomic_resource.yaml | 2.54 KB | 397907f86297b3776d894a30030ef497 |
| genomic_resource_original.yaml | 2.45 KB | d85aaeb8b5c20ef5ed2ee695edb46e24 |
| statistics/ |