Resource
| Id | ATAC-seq/ENCSR096VEO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR096VEO [biosample_summary="Homo sapiens HG03135"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN348AHM|/analyses/ENCAN348AHM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF004CBW|/files/ENCFF004CBW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.802808. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF004CBW|/files/ENCFF004CBW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR096VEO | float |
ATAC-seq_ENCSR096VEO |
ATAC-seq ENCSR096VEO [biosample_summary="Homo sapiens HG03135"]
|
 |
[1.45, 27.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49551603 | 1.54% | 88617 |
| chr1 | 4472924 | 1.80% | 7902 |
| chr2 | 4215362 | 1.74% | 7719 |
| chr3 | 3389546 | 1.71% | 6282 |
| chr4 | 2802263 | 1.47% | 5283 |
| chr5 | 2965510 | 1.63% | 5486 |
| chr6 | 3297566 | 1.93% | 5979 |
| chr7 | 2707398 | 1.70% | 4919 |
| chr8 | 2428071 | 1.67% | 4505 |
| chr9 | 1995700 | 1.44% | 3578 |
| chr10 | 2342284 | 1.75% | 4218 |
| chr11 | 2338944 | 1.73% | 4154 |
| chr12 | 2483648 | 1.86% | 4411 |
| chr13 | 1334526 | 1.17% | 2475 |
| chr14 | 1519945 | 1.42% | 2666 |
| chr15 | 1414042 | 1.39% | 2458 |
| chr16 | 1453582 | 1.61% | 2371 |
| chr17 | 1821460 | 2.19% | 2997 |
| chr18 | 1131271 | 1.41% | 2091 |
| chr19 | 1525905 | 2.60% | 2291 |
| chr20 | 1071041 | 1.66% | 1888 |
| chr21 | 483539 | 1.04% | 821 |
| chr22 | 684073 | 1.35% | 1069 |
| chrX | 1672221 | 1.07% | 3051 |
| chrY | 782 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88617 | 150 | 3079 | 559.17 | 458 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF208TTV.bed.gz | 3.56 MB | 7ef604256c1b4c305be11b1f07b0fb75 |
| ENCFF208TTV.tabix.bed.gz | 999.42 KB | 4c6dec7188b10b3c14a4b1863fc491ae |
| ENCFF208TTV.tabix.bed.gz.tbi | 411.47 KB | cecf78f3e8c6955c157ed55e4f29a250 |
| genomic_resource.yaml | 2.49 KB | 28403e287c336c808306723064a2bd9b |
| statistics/ |