ATAC-seq_ENCSR096VEO
ATAC-seq ENCSR096VEO [biosample_summary="Homo sapiens HG03135"]
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| Id: | ATAC-seq/ENCSR096VEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR096VEO [biosample_summary="Homo sapiens HG03135"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN348AHM|/analyses/ENCAN348AHM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF004CBW|/files/ENCFF004CBW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.802808. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF004CBW|/files/ENCFF004CBW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR096VEO | float |
ATAC-seq_ENCSR096VEO |
ATAC-seq ENCSR096VEO [biosample_summary="Homo sapiens HG03135"]
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[1.45, 27.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF208TTV.bed.gz | 3.56 MB | 7ef604256c1b4c305be11b1f07b0fb75 |
| ENCFF208TTV.bed.gz.dvc | 101.0 B | df7901cff86364c1e927131d9a0a5209 |
| ENCFF208TTV.tabix.bed.gz | 999.42 KB | 4c6dec7188b10b3c14a4b1863fc491ae |
| ENCFF208TTV.tabix.bed.gz.dvc | 107.0 B | 418c89ba676724e74220dfff00be78a8 |
| ENCFF208TTV.tabix.bed.gz.tbi | 411.47 KB | cecf78f3e8c6955c157ed55e4f29a250 |
| ENCFF208TTV.tabix.bed.gz.tbi.dvc | 110.0 B | 21acff87e06b657e4e6523c99805a556 |
| genomic_resource.yaml | 2.49 KB | 28403e287c336c808306723064a2bd9b |
| genomic_resource_original.yaml | 2.42 KB | 08a01ba680d4eafba4083d0c028a401a |
| statistics/ |