ATAC-seq_ENCSR096BPX
ATAC-seq ENCSR096BPX [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR096BPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR096BPX [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473YZI|/analyses/ENCAN473YZI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN473YZI|/analyses/ENCAN473YZI/} has in progress subobject document {eb17df69-73f3-43d7-9e49-6138149efd94|/documents/eb17df69-73f3-43d7-9e49-6138149efd94/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF181DWD|/files/ENCFF181DWD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.05. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF181DWD|/files/ENCFF181DWD/} (overlap peaks) and {ENCFF984VPG|/files/ENCFF984VPG/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 63096 and 20473 peaks. audit_warning: Transcription Start Site (TSS) enrichment values for alignments to the human genome GRCh38 are concerning when < 5, acceptable between 5 and 7, and ideal when > 7. ENCODE processed file {ENCFF479ISR|/files/ENCFF479ISR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a TSS enrichment value of 6.583807805114838. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR096BPX | float |
ATAC-seq_ENCSR096BPX |
ATAC-seq ENCSR096BPX [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (51 years)"]
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[1.62, 28.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF181DWD.bed.gz | 1.48 MB | 47b57a3158d935d3f3000b891d3c136b |
| ENCFF181DWD.bed.gz.dvc | 101.0 B | c9f513985213f56a07cef3f39b96f907 |
| ENCFF181DWD.tabix.bed.gz | 540.15 KB | 5a8596230d3d34265ccaa4b47fbddcbb |
| ENCFF181DWD.tabix.bed.gz.dvc | 106.0 B | e335107b6c16118b4f0f31ccae46cc05 |
| ENCFF181DWD.tabix.bed.gz.tbi | 298.83 KB | 4d59ebca4eb1845e4dc33d772f489190 |
| ENCFF181DWD.tabix.bed.gz.tbi.dvc | 110.0 B | 27dd8f3a0a0f5e4e9c3fb7164333d993 |
| genomic_resource.yaml | 3.0 KB | 48440822c7ced6c174df9635325cd1f9 |
| genomic_resource_original.yaml | 2.88 KB | d36db023bbd31837789b766c3beb5180 |
| statistics/ |